Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 584 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 580 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 573 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 483 / 1e-166 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 397 / 6e-134 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G23200 392 / 1e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 373 / 2e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 368 / 1e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 366 / 4e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 360 / 5e-118 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031719 [exp] 996 / 0 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 604 / 0 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 597 / 0 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 595 / 0 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 589 / 0 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031141 [exp] 573 / 0 AT5G51490 523 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038919 [exp] 529 / 0 AT5G51490 462 / 6e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 489 / 9e-169 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 466 / 8e-161 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 631 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 608 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 547 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 523 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 492 / 2e-170 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 491 / 4e-170 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 452 / 9e-155 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 449 / 2e-153 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 386 / 3e-128 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 384 / 2e-127 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031140 pacid=23150995 polypeptide=Lus10031140 locus=Lus10031140.g ID=Lus10031140.BGIv1.0 annot-version=v1.0 ATGATGAGACCCATAATTAGGCTATTCACAATCCTCCCCTTCTTCTTCTTATTCTCTTTGCCAATTGCCTCATTGGCTCAAGGTTACACCAACCACTCGA GCCTACTCCGATGGTGCAAGGGGACCCCACACCCGAGCACGTGTAACCACTACACAAGTCGGGTCAGCTGTCCCCACCCAAACGGGCCCACCAAGAGGTC AGAATTCAGAATCATGATCGTCGAAGCAGCCCTCGAGAGAGCCATCGACGTGGAGCGCAGCGTCTACAGACAGCGGTCCAAGGCCCAGACCCACCAGCAG AGGGTCGCGTGGATCGACTGCATGAGGCTCCACCTCAGCACGGTCCGCCACCTCAACCATACCTTGCAGGGTCTCAGGTCGACACCCAAGTCATGCACGA ACTTGGATGCCCAGACCTGGCTGAGCAGCTCCCTGACCAACCTCGACACGTGCCAGTCAGGGTTTATGGACCTTAACGTGACCGAGTTTTTGAACCCGAT CATGTCCAGCAGCAATCTTTCGGAACTAATCAGCAATACTCTTGCGGTCAATCACGGATTGCTGACTGCGAGTGGAGGTGATGTGGATGATGATGATGAG GAGGGGGCCACATTTCCGAAGTGGTTCGCGAACCACGAGGGGAGGTTGTTGCAAGGCCGGCCCGGGGTGGGTACTAGTGACCTAAAGGGAAATTTGGTTG TGGCTTTGGACGGGTCAGGTAATTTCAAAACGGTTCAAGCCGCAATTGATTTTGCCAAGAGGAGGAAGTATAGAACTAGGTTTGTCATTAGGGTGAAGGC TGGTGTTTATAAGGAGAATATTGAGGTGGATTATGATAATAGCTATATTTGGTTGATCGGCGACGGAATCAGAAAGACTATTATCACCGGCGACCGTAGC GTTGGGAGTGGATACACCACGTTCAGTTCGGCCACCGCCGGAATCGACGGCCCCCGATTTGTGGCACGTGGCATAACATTTCGAAACACTGCCGGCCCCA AAAACGGCCAAGCAGTCGCCCTCCGATCAACCTCCGACTTGGCCGTCTTCTACCGGTGCTCCTTCGAAGGCTACCAAGACACCCTATTCATCCACTCCCA GCGACAGTTCTTCCGCGAGTGCTACATCTCCGGCACCATCGACTTCATCTTTGGCAATGCAGCCGCCGTCTTCCAAGGATGCGTAATCGCCGCCCGCCGC CCCCTTCCCGGCCAGGCCAACATGATCACCGCCCAGTCCCGGAACGACCCGTTCCAAAACACGGGGATATCGATCCACAACTCGAAGATCATGCCCGCAC CGGACCTGCTGCCAGTGGTCCGGGCGGTCAAGACTTACTTGGGCCGGCCGTGGTTTCTCTACTCGAGGACGGTGGTTATCAAGACCTATATGGACCGGTT CATTTACCCGGCTGGTTGGTCCAAGTGGATAGACTCGAATGCTGCCCTTAGTACTTTGTACTATGCGGAGTACAAGAATTTCGGGCCGGGTGGTTCGACC CGGTACAGGGTCCGTTGGCCCGGGTTTCATGCTTTGAAGAGTGACGCAGAGGCTTCCAGGTTTACGGTGGACGGGCTTCTCGCCGGCAAGTCGTGGCTTC CATCGACCGGTGTTCCGTTTGTGTCTGGTCTTTGA
AA sequence Show only first row Show all	>Lus10031140 pacid=23150995 polypeptide=Lus10031140 locus=Lus10031140.g ID=Lus10031140.BGIv1.0 annot-version=v1.0 MMRPIIRLFTILPFFFLFSLPIASLAQGYTNHSSLLRWCKGTPHPSTCNHYTSRVSCPHPNGPTKRSEFRIMIVEAALERAIDVERSVYRQRSKAQTHQQ RVAWIDCMRLHLSTVRHLNHTLQGLRSTPKSCTNLDAQTWLSSSLTNLDTCQSGFMDLNVTEFLNPIMSSSNLSELISNTLAVNHGLLTASGGDVDDDDE EGATFPKWFANHEGRLLQGRPGVGTSDLKGNLVVALDGSGNFKTVQAAIDFAKRRKYRTRFVIRVKAGVYKENIEVDYDNSYIWLIGDGIRKTIITGDRS VGSGYTTFSSATAGIDGPRFVARGITFRNTAGPKNGQAVALRSTSDLAVFYRCSFEGYQDTLFIHSQRQFFRECYISGTIDFIFGNAAAVFQGCVIAARR PLPGQANMITAQSRNDPFQNTGISIHNSKIMPAPDLLPVVRAVKTYLGRPWFLYSRTVVIKTYMDRFIYPAGWSKWIDSNAALSTLYYAEYKNFGPGGST RYRVRWPGFHALKSDAEASRFTVDGLLAGKSWLPSTGVPFVSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	0	1
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	1.0	0.9284
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	3.7	0.9273
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10009969 [exp]	4.0	0.9090
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	4.9	0.9244
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10043406 [exp]	8.1	0.8913
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	8.4	0.8809
AT1G71910			unknown protein		Lus10016934 [exp]	9.9	0.8966
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	12.2	0.9146
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	12.4	0.9152
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	12.7	0.9076

Compare expression of checked genes

Lus10031140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.