Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 488 / 3e-168 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 476 / 2e-163 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 474 / 3e-162 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 407 / 8e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 333 / 1e-108 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G23200 332 / 6e-107 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 318 / 1e-101 ATPMEPCRA methylesterase PCR A (.1) AT3G60730 317 / 1e-101 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 314 / 7e-100 ATPME3 pectin methylesterase 3 (.1) AT3G43270 310 / 3e-99 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031720 [exp] 1020 / 0 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 677 / 0 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 640 / 0 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 629 / 0 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 538 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 525 / 0 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038919 [exp] 446 / 3e-150 AT5G51490 462 / 6e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 421 / 5e-142 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 407 / 2e-137 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 536 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 508 / 5e-176 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 461 / 5e-158 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 451 / 4e-154 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 421 / 3e-142 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 417 / 6e-141 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 398 / 3e-133 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 371 / 6e-123 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 326 / 8e-105 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 325 / 3e-104 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031141 pacid=23151167 polypeptide=Lus10031141 locus=Lus10031141.g ID=Lus10031141.BGIv1.0 annot-version=v1.0 ATGTCGTCTATGGTCACCTTTAGCATCCTCTCCTTTACAATCTCTTGTTACATTATCTTTTGGTCTCCGATTGTATCTTCGGAGGTAGACGCAGTTACCT TATGGTGCAAGGAAACTCCCCACCAAGAAGCATGCACCCGCTATTTGTCGACCCAAACCTATTTGAATGATGGAAGCGGGATACAACATAAGTCAGCTTT TCGTGAACTGGCCATCGAGGCGGCCTTGAAAAAGGCACTCGACGTGGAAAGTCAACTGTACAGGCAAAAGTCAAAGTGTAGCAACCCGCAACAGTTAACT GTGTGGAGCGACTGCACGAAGCTCCATGCCAGCACCATCCGCCACCTCAATAGCACGCTAAGGTGTCTGAAGGGCACCACCCCTACGACGATGAGATGCA CAGACTTCGATGCGCAGACGTGGCTCAGCAGCGCGCTGACCAACGTAGAGACGTGCAGGGCGGGGTCCACGGACTTGAACATGCCCAACTTCATCGCCCC GATGATCAAATCCAGCAACCTGTCGGAGCTGATCACCAACACGCTGGCGGTCAACGGGGTGATGCTGACGGCAGAAGAGAAGGAAAATGTCCATGCAGAC GACCAGCTGTTACCCGTCTCGACAAGGTGGGTGACAGCAAAGTGGAGGAGGGACGACGAGAGGAGGCTTCTAGAAGGTTCGATCGCCTCGTTGATTGTGA AGTCGGATACCGTGGTGGCTAAGGACGGTTCAGGGAAGTTCAGGACGGTTCAGGACGCGATCGATTTGGCCGCGAAGAGAGACGACTGTAGGGAGAAGTT TATCATAAGAGTGAAGCAGGGAATTTATGAGGAGACAATTGAGGTTTTGGATAGTAATCATAACGTTTGGCTCGTCGGAGATGGTATCGGAGTTACCATA ATTACCGGCAACCGTAGCGTTGGGAGTGGGAATTACACGACTTTCAGTTCCGCCACCGCTGGGATCGACGGCGCAAGGTTCGTAGCCAGAGGAATCACGT TCAGGAACACCGCCGGCCCACAAAAGCGGCATGCGGGGGGGGGCCCATCTACCGCCCCCCCACCCCTACGATCAGCCTCCGACCTCGCCGTGTTCTACCA ATGCAGCTTCCAGGGCTACCAGGACACCCTCTTCATCCAAACCCAGCGCCAATTCTTCCGTGACTGCCACCTCTCCGGCACTGTGGACTTCATCTTCGGA AACGCCGCCGCGGTCTTCCAGAACTGCTTTATCTTCGTACGGCGACCGATGGACGGCCAGATCAACACCATCACTGCTCAGGGGAGGCAGAACTCGTTCG AGCACACCGGATTCTCCATCCACGGCTCCAAGATCCTCCCGTCACCCGAGCTGAAGCCGGTTGCCGACAAGTTCCCGACGTACCTCGGCCGGCCGTGGAT GCGGTACTCGAGGACGGTGGTCATGAAGAGTTACATGGACGGGATCGTCTCTCCAGAGGGATGGTTGAAATGGGGAGGGACCGATTTCGCTCTGAATAGT CTCTACTTCGGAGAGTACAACAATACCGGCGCCGGAGCTTGTACGGATCACAGGGTAACGTGGAGAGGGTTCCACGTCATCAATGACGACGTTACAGCGA AGCAGTTTACCGTTAACGGGCTTTACGCTGGCCGTTCGTGGCTTCCGTCCACTGGGGTTCCGTTTAATGGTGATCTTTAA
AA sequence Show only first row Show all	>Lus10031141 pacid=23151167 polypeptide=Lus10031141 locus=Lus10031141.g ID=Lus10031141.BGIv1.0 annot-version=v1.0 MSSMVTFSILSFTISCYIIFWSPIVSSEVDAVTLWCKETPHQEACTRYLSTQTYLNDGSGIQHKSAFRELAIEAALKKALDVESQLYRQKSKCSNPQQLT VWSDCTKLHASTIRHLNSTLRCLKGTTPTTMRCTDFDAQTWLSSALTNVETCRAGSTDLNMPNFIAPMIKSSNLSELITNTLAVNGVMLTAEEKENVHAD DQLLPVSTRWVTAKWRRDDERRLLEGSIASLIVKSDTVVAKDGSGKFRTVQDAIDLAAKRDDCREKFIIRVKQGIYEETIEVLDSNHNVWLVGDGIGVTI ITGNRSVGSGNYTTFSSATAGIDGARFVARGITFRNTAGPQKRHAGGGPSTAPPPLRSASDLAVFYQCSFQGYQDTLFIQTQRQFFRDCHLSGTVDFIFG NAAAVFQNCFIFVRRPMDGQINTITAQGRQNSFEHTGFSIHGSKILPSPELKPVADKFPTYLGRPWMRYSRTVVMKSYMDGIVSPEGWLKWGGTDFALNS LYFGEYNNTGAGACTDHRVTWRGFHVINDDVTAKQFTVNGLYAGRSWLPSTGVPFNGDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51490			Plant invertase/pectin methyle...		Lus10031141 [exp]	0	1
AT2G23440			unknown protein		Lus10009347 [exp]	1.4	0.7608
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10023445 [exp]	6.5	0.7210
AT1G17930			Aminotransferase-like, plant m...		Lus10012081 [exp]	7.7	0.6974
AT5G36930			Disease resistance protein (TI...		Lus10014303 [exp]	11.4	0.6277
AT1G07060			unknown protein		Lus10031856 [exp]	15.3	0.5168
AT1G05270			TraB family protein (.1)		Lus10038419 [exp]	16.5	0.5829
AT2G01050			zinc ion binding;nucleic acid ...		Lus10032865 [exp]	27.1	0.5525
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	30.4	0.5450
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	35.7	0.5629
					Lus10004853 [exp]	36.4	0.5403

Compare expression of checked genes

Lus10031141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.