Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12260 310 / 5e-104 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT1G62700 296 / 2e-98 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT4G36160 273 / 1e-89 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT2G18060 271 / 3e-89 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G62380 266 / 2e-87 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT5G66300 255 / 8e-84 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT1G71930 233 / 8e-75 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT2G46770 229 / 7e-73 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G10350 224 / 3e-71 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT1G32770 221 / 2e-69 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031721 [exp] 458 / 3e-163 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10024601 [exp] 306 / 2e-102 AT1G12260 436 / 3e-152 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10032238 [exp] 302 / 8e-101 AT1G12260 432 / 6e-151 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10041822 [exp] 259 / 1e-84 AT2G18060 352 / 3e-120 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10028372 [exp] 258 / 8e-84 AT2G18060 349 / 4e-119 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10017915 [exp] 249 / 2e-81 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10009939 [exp] 220 / 1e-70 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10033239 [exp] 224 / 5e-70 AT1G32770 318 / 2e-106 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10002687 [exp] 222 / 3e-69 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126500 [exp] 318 / 1e-107 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.015G127400 [exp] 317 / 6e-107 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.001G120000 [exp] 307 / 2e-103 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.003G113000 [exp] 305 / 1e-102 AT1G12260 439 / 3e-154 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.007G014400 [exp] 266 / 5e-87 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.005G116800 [exp] 260 / 8e-85 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.019G083600 [exp] 242 / 2e-78 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.013G113100 [exp] 238 / 5e-77 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.014G104800 [exp] 230 / 7e-73 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G178700 [exp] 228 / 3e-72 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10031142 pacid=23151045 polypeptide=Lus10031142 locus=Lus10031142.g ID=Lus10031142.BGIv1.0 annot-version=v1.0 ATGAACTCATTTTGCCATGTCCCTCCCGGTTTCCGGTTCCATCCCACGGACGAAGAACTGGTAGACTACTACCTTAGGAAGAAAGTTAACTCGAGAAGGA TCGACCTTGATGTCATTAAAGATGTCGACCTTTACAAGATCGAACCATGGGACCTTCAAGAACTCTGCAGGATAGGGAGTGAAGAGCAAAGCGAGTGGTA CTTTTTCAGCCACAAGGACAAGAAGTATCCGACGGGAACTCGAACCAACAGGGCTACCACAGCTGGATTCTGGAAAGCCACCGGGAGGGACAAGGCCATA TACTCCAAGCACGAGTTGATCGGGATGCGAAAGACCCTCGTTTTCTACCAAGGTCGCGCCCCCAACGGGCAGAAGTCTGACTGGATCATGCACGAGTATC GCCTCGAAACTGATGAGAATGCGGCTCCCCAGGAAGAAGGATGGGTGGTGTGTAGGGTTTTCAAGAAGAGAATCACTACAATGAGGAAAATGAACGACCA TGACGTGTCGTCTTGTAATTGGTACGTCGACGACCAACTCTCCTCTTCTTCCTTCATGCATCACGACAACTCCCCTGACCAAACAACTTCCACCACCTCT CATCCGCCGCCACCTCCGCCGTCGCTGCCTCTTCACCACCACCTTTACAACACCTCATCATCATGCAAGAAAGAGCTGGCCGACCTCGCGGCCCACTTCC CCTTACCGCGCCATCAAGACCAATACTTCCTCCAACTCCCACTCCTCCAGAGCTCCAAACCGCCGCCCCACATTGCTCCATCCTACAATATGTTGGATGA TCAAATGACGGATTGGAGAGTGCTCGATAAGTTTGTCGCCTCTCAACTCAGCCAGAGTGATCATGATGAAGAGGATGAGCAGGAGGATCGAGATCAGAAC CGCATCGAACTGGCTGATGATAGGGATACAGATCAGGAGCTACCGAGGTTGAGTAGTGGTACAAATCAAATTGATACGTGGAAGTGA
AA sequence Show only first row Show all	>Lus10031142 pacid=23151045 polypeptide=Lus10031142 locus=Lus10031142.g ID=Lus10031142.BGIv1.0 annot-version=v1.0 MNSFCHVPPGFRFHPTDEELVDYYLRKKVNSRRIDLDVIKDVDLYKIEPWDLQELCRIGSEEQSEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI YSKHELIGMRKTLVFYQGRAPNGQKSDWIMHEYRLETDENAAPQEEGWVVCRVFKKRITTMRKMNDHDVSSCNWYVDDQLSSSSFMHHDNSPDQTTSTTS HPPPPPPSLPLHHHLYNTSSSCKKELADLAAHFPLPRHQDQYFLQLPLLQSSKPPPHIAPSYNMLDDQMTDWRVLDKFVASQLSQSDHDEEDEQEDRDQN RIELADDRDTDQELPRLSSGTNQIDTWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	2.4	0.9839
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10000788 [exp]	3.5	0.9807
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	5.7	0.9806
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10037189 [exp]	6.6	0.9750
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	7.3	0.9773
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10005670 [exp]	7.5	0.9514
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	8.4	0.9739
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	8.5	0.9794
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	8.9	0.9777
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10027078 [exp]	11.0	0.9658

Compare expression of checked genes

Lus10031142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.