Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 720 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 712 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 479 / 5e-163 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 475 / 2e-161 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G52600 456 / 3e-154 ATCWINV2 cell wall invertase 2 (.1.2) AT3G13784 447 / 5e-151 ATCWINV5 cell wall invertase 5 (.1) AT2G36190 445 / 1e-149 ATCWINV4 cell wall invertase 4 (.1) AT5G11920 430 / 2e-144 ATCWINV6 6-&1-fructan exohydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004340 [exp] 761 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10028922 [exp] 751 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 749 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 743 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 717 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 528 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10008392 [exp] 481 / 1e-163 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 467 / 2e-158 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 458 / 7e-155 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127100 [exp] 833 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.003G112600 [exp] 753 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 724 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.006G227400 [exp] 483 / 8e-165 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.016G077400 [exp] 475 / 2e-161 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227500 [exp] 470 / 1e-159 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 464 / 4e-157 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 451 / 4e-152 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0143 [flax] [poplar] PF11837 [flax] [poplar] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Lus10031144 pacid=23150979 polypeptide=Lus10031144 locus=Lus10031144.g ID=Lus10031144.BGIv1.0 annot-version=v1.0 ATGGCGATCGCCGACCCGGAAACCCCACTTCTCGACCCGACCCGTAAGCGGCAACAATGCGGCGGCCGGTTGTTCTCTTTTCTAGTCATTGTTGCCGCCG TGGTGGGTCTCCTCACATTGGCCGGAGACTACCGGACCCAAAAGCATCAGCCTTCGGTAGAGTCTTCTACCACTTCTGCGTCGGCGGCGGTGGTGGAGAG AGGAGTGAAGGAAGGGGTGTCGGCGAAGTCTTCGCTGGCGGCGGCGGGGGTTTCGTCGTACAACTGGACGAATGCTATGTTTACGTGGCAGAGGACTGCA TACCATTTCCAGCCCCAGCGGAATTGGATGAACGATCCTGACGGTCCATTATACTACAAAGGGTGGTACCACTTCTTCTACCAATACAACCCAAACGCTG CCGTTTGGGGAAACATAACGTGGGGCCACGCCGTCTCCCGAGACTTAATCCATTGGCTCTACTTGCCGTTAGCTCTCGTCCCCGATCAATGGTACGACAT TAATGGTGTTTGGACCGGTTCCGCAACCTACCACCCAAACGGCAACATCTACATGCTCTACACGGGCAGCACATCCAACCTAACCCAAGTCCAAGCCCTG GCCCACCCGGCCGACCTCTCGGACCCACTTCTGATCCATTGGGTCAAACACCCGGCCAACCCGGTCCTCCTTCCACCGCCTGGAATCGGGCCCAAGGATT TTCGTGACCCGACCACAGCCTGGTTAGGCACCGACGGGTTGTGGCGGGTCGCGATCGGTTCCAAGGTTGAGAAACTCGGTATCACGCTGGTTTACAAGAC TGCGGATTTCATTCATTATGAGTTACTAGACAATTACTTGCACTCTGTTCCGGGTACGGGCATGTGGGAGTGTGTGGATTTCTATCCGGTTCTGGTTAGC GGGACAAAGGGTCTGGACACGTCAGCAACAGTGGGGCCGGGGATTAAGCACGTGTTGAAGGCGAGTTTGGACGATACGAAATTGGACTATTTCGCGATTG GATCGTACGACCCGATTAAGGATGTTTGGGTGCCCGACAACCCGGATATCGATGTGGGAATCGGGTTGAGGTATGATTATGGACGGTATTATGCCTCTAA GACGTTCTATGATCAAAAGAAAGAGAGGAGGATTCTTTGGGGTTGGATTAATGAAACCGATACTGAATTGGATGACATCAAAAAGGGTTGGTCCTCTCTC CAGACGATTCCAAGGACGGTGTTACTGGACAGCAAGACCGGAGCAGATCTACTACAGTGGCCAGTAGAAGAGATCGAAACCTTAAGGCTAAGATGCTTCC ATTTTGATGAAGTTCTATTGTCGCCGGGCTCCGTCGTCCCGCTACACATCGGCGCTGCAACACAGCTGGACATAATGGCAGAGTTTGAAATAATGGAGTT TGTATCGGAGAAGAAGAAAACTCCGGCGGTGGAGGATTATGGTTGTGGCGGCGGGGCGGCTGATAGGAGCAGTTTTGGGCCGTTTGGGATTGTAGCTCTG GCGGATGTCTCGCTCTCTGAGCTCACTCCCGTTTTCTTCCGGCCGGTTGGTTTGGCCGACGGCAGCCGAACCACTTACTTTTGTACCGACCAAACCAGGT CATCATTGGCTCCGGAAGTGTACAAAGTGGTGTACGGCAGTTCAATCCCGGTGATCGGCAACGAGAAGCTAGAGATGAGAGTGCTGGTGGATCATTCGAT CGTCGAGAGCTTCGGACAAGGAGGACGGAGAGTGATATCGTCGAGAGTTTATCCTACGAAGGCCATCTACGGCGACGCCAAGCTCTTCTTGTTTAACAAT GCAACGGACGTCAACGTTAAAATTAGTCTCAAGATTTGGGAGATGAACTCTGCCTTCATCCGACATTACCCTCTTTGA
AA sequence Show only first row Show all	>Lus10031144 pacid=23150979 polypeptide=Lus10031144 locus=Lus10031144.g ID=Lus10031144.BGIv1.0 annot-version=v1.0 MAIADPETPLLDPTRKRQQCGGRLFSFLVIVAAVVGLLTLAGDYRTQKHQPSVESSTTSASAAVVERGVKEGVSAKSSLAAAGVSSYNWTNAMFTWQRTA YHFQPQRNWMNDPDGPLYYKGWYHFFYQYNPNAAVWGNITWGHAVSRDLIHWLYLPLALVPDQWYDINGVWTGSATYHPNGNIYMLYTGSTSNLTQVQAL AHPADLSDPLLIHWVKHPANPVLLPPPGIGPKDFRDPTTAWLGTDGLWRVAIGSKVEKLGITLVYKTADFIHYELLDNYLHSVPGTGMWECVDFYPVLVS GTKGLDTSATVGPGIKHVLKASLDDTKLDYFAIGSYDPIKDVWVPDNPDIDVGIGLRYDYGRYYASKTFYDQKKERRILWGWINETDTELDDIKKGWSSL QTIPRTVLLDSKTGADLLQWPVEEIETLRLRCFHFDEVLLSPGSVVPLHIGAATQLDIMAEFEIMEFVSEKKKTPAVEDYGCGGGAADRSSFGPFGIVAL ADVSLSELTPVFFRPVGLADGSRTTYFCTDQTRSSLAPEVYKVVYGSSIPVIGNEKLEMRVLVDHSIVESFGQGGRRVISSRVYPTKAIYGDAKLFLFNN ATDVNVKISLKIWEMNSAFIRHYPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10031144 [exp]	0	1
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018768 [exp]	6.9	0.7465
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10020085 [exp]	8.9	0.7570
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	18.7	0.7611
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	34.9	0.7084
AT2G14540		ATSRP2	serpin 2 (.1)		Lus10009905 [exp]	35.9	0.7040
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	38.2	0.7254
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	46.0	0.7103
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	50.6	0.7039
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10040466 [exp]	64.7	0.6708
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	67.7	0.7356

Compare expression of checked genes

Lus10031144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.