Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 538 / 0 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 526 / 0 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 515 / 1e-179 CYP79A2 cytochrome p450 79a2 (.1) AT1G58260 440 / 6e-150 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT5G35917 427 / 1e-145 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G79370 426 / 2e-144 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G16400 410 / 2e-138 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G16410 407 / 4e-137 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G01280 249 / 2e-76 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 228 / 3e-68 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031726 [exp] 815 / 0 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031151 [exp] 807 / 0 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023143 [exp] 733 / 0 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023144 [exp] 731 / 0 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 673 / 0 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023142 [exp] 450 / 2e-157 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10000239 [exp] 369 / 1e-124 AT2G22330 331 / 7e-110 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10031727 [exp] 310 / 2e-101 AT5G35917 216 / 2e-65 "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) Lus10012624 [exp] 257 / 3e-79 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157200 [exp] 548 / 0 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 534 / 0 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.004G055200 [exp] 534 / 0 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 260 / 2e-80 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.006G141400 [exp] 235 / 9e-71 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 233 / 3e-70 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 233 / 8e-70 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G033300 [exp] 232 / 9e-70 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.007G084700 [exp] 231 / 1e-69 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 231 / 2e-69 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031145 pacid=23151031 polypeptide=Lus10031145 locus=Lus10031145.g ID=Lus10031145.BGIv1.0 annot-version=v1.0 ATGAACACCTTCACAATCATCCTCCTCCTTGCCCTCCTCATAATCCTCACCGTCCCCGTCACGAAACGACATCGACGACTCTCCTCGAAGCCAATGGCAA AGCTGCCACCGAGCCCGCCTTCGAGCTGGCCGGTTATCGGGAACCTCCGAGAGGTTTTGACGAAGAAGCCGGCGGCGTTCAGGTGGATTCATCAGGTGAT GGAGGAGATGGGCACAGACATTTGCCTCATCCGCCTGGTCGGGACCAACATTGTCTCAGTGCTGGACCCGGCCATCGCGAGGGAAATGCTGAAGAAGCAG GACGCGGTCTTCGCGGACCGCCCCTCCTTCTCCGTGGGCAGCCACGCCCTGAGCGGGGGAGAATACAAGACCACTGTGGTGGCTCCCTACGACGACCACT GGCGCAAGATGAGGAAGGTGTTGACTTCCGAGATCATCTCCCCGGCTCGACACAAGTGGCTCCACGACAAGCGCGCCATGGAAGTCGACAACCTTGTGTT CTACGTCCACAACCATAGCGGGGCCCACAAGAGCGTCAACCTTAGGGTTGTCGCGCAACACTACTGTGGTAACGTGATAAGGAAGTTGATGTTCAACAGG AGGTTCTTCGGAGAGCCTACGACAGATGGTGGGCCGGGCCCCGAGGAGGTCGAGCACGTTGATGCTGTGTTCGGGGCTTTGAAGTACGTGTATTCGTTTT CCATATCGAACATCTTTCCTTTCCTAGGAGGGTTGGACGTGGATGGTCAAGGGAAGGTGATCAAGCAAGCGAATAAGACGATGAGGGATTACCAGAACCC GATCATCGACGAGAGGATTCGACAATGGCGAAGCGGAGAGAGGAAGGAGATGGAGGACCTCACTGATGTTTTCATTACTCTCAAGGATACCGACGGCAAG CCATTGCTCTCCCGCAATGAAATCACCAACCAAGCTGTGGAAATCATGTTAGCCACGGTGGACAACCCATCACACGTGGTAGAGTGGACAATGGCAGAGC TGATAAACCAACCGGAACTCCTAGCCAAGGCGACCGAAGAAATCGACCGAATTGTCGGAAAAGACCGTCTAGTTCAAGAATCCGACGTCGGAAGCCTCAA TTACATCAAGGCATGTGCCAGGGAATCGTTCCGTCTCCACCCAGTGTCAGCATTCAACGTGCCCCATGTTGCGACCGAGGACACAGTGGTCGCGGGCTAC TTCATCCCCAAAGGCAGTCATGTTATGCTGAGCCGCTATGGCCTCGGCCGCAACCCTAAGGTCTGGGTTGACCCGCTCAAATTCGATCCAGAACGCCACT TACATGACGGTAATGAGGTCGTTTTGACTGAACATGACATCAGGTTCATTTCTTTTAGCACGGGCCGTCGTGGGTGCCCAGGGGCTCTACTGGGCACTTG TATGACCACCATGATGCTCGCGAGGTTGATCCAGTGCTTCACGTGGGCCCCGTCGGATGGGTCTAAGATGATCGATATGAGGGAAGCAGAGGATGAGCTT GTCCTTGCGTCCCCACTCACGGTTTCTGCTACGCCGCGGTTGGATCCCCACCTGTACCCTGTCGTTGTCGTCAAATGA
AA sequence Show only first row Show all	>Lus10031145 pacid=23151031 polypeptide=Lus10031145 locus=Lus10031145.g ID=Lus10031145.BGIv1.0 annot-version=v1.0 MNTFTIILLLALLIILTVPVTKRHRRLSSKPMAKLPPSPPSSWPVIGNLREVLTKKPAAFRWIHQVMEEMGTDICLIRLVGTNIVSVLDPAIAREMLKKQ DAVFADRPSFSVGSHALSGGEYKTTVVAPYDDHWRKMRKVLTSEIISPARHKWLHDKRAMEVDNLVFYVHNHSGAHKSVNLRVVAQHYCGNVIRKLMFNR RFFGEPTTDGGPGPEEVEHVDAVFGALKYVYSFSISNIFPFLGGLDVDGQGKVIKQANKTMRDYQNPIIDERIRQWRSGERKEMEDLTDVFITLKDTDGK PLLSRNEITNQAVEIMLATVDNPSHVVEWTMAELINQPELLAKATEEIDRIVGKDRLVQESDVGSLNYIKACARESFRLHPVSAFNVPHVATEDTVVAGY FIPKGSHVMLSRYGLGRNPKVWVDPLKFDPERHLHDGNEVVLTEHDIRFISFSTGRRGCPGALLGTCMTTMMLARLIQCFTWAPSDGSKMIDMREAEDEL VLASPLTVSATPRLDPHLYPVVVVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	10.1	0.9946
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	10.3	0.9864
					Lus10002921 [exp]	12.4	0.9704
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	12.8	0.9672
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	13.6	0.9530
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041681 [exp]	14.3	0.9424
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	15.1	0.9939
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	16.6	0.9782
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	19.6	0.9913
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	22.5	0.9913

Compare expression of checked genes

Lus10031145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.