Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51460 516 / 0 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G22590 450 / 1e-158 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 435 / 5e-153 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G35910 377 / 6e-130 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G22190 366 / 7e-126 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 365 / 3e-125 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G78090 365 / 3e-125 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT4G39770 363 / 6e-125 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 357 / 3e-122 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G22210 332 / 7e-113 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031723 [exp] 693 / 0 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10027208 [exp] 586 / 0 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 560 / 0 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 494 / 6e-176 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 489 / 6e-174 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019666 [exp] 382 / 3e-132 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10000687 [exp] 332 / 3e-112 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10019010 [exp] 312 / 9e-105 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 309 / 1e-103 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G126900 [exp] 544 / 0 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.012G126100 [exp] 535 / 0 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 478 / 1e-169 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 468 / 1e-165 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G090900 [exp] 389 / 8e-135 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 386 / 2e-133 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 380 / 5e-131 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G001000 [exp] 333 / 7e-113 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 319 / 1e-107 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 268 / 3e-88 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10031146 pacid=23151181 polypeptide=Lus10031146 locus=Lus10031146.g ID=Lus10031146.BGIv1.0 annot-version=v1.0 ATGGACCTAAAGCCAACTCATGCTTCCCCGGTTCTCACTGATTCTGCACCCGTGCCAAAATCGAGACTGCATTCCACGATGTTACCGTGCCCTGTAGCAA CATTCTCGCCGAATTTGTGTCTGACCGTGCCAAGGAAGAAAACCGGTTTGCTGGACGATGTGCGCTCCAGCAGCTGGCTAGATGCTATGAAAGCATCCTC ACCGCCTCCCAAGAGGCTGACCAGAGACCAGAGCAATGAACATACATTGCCTGATGACATCTGCTACCTTAACTGGCTGCTTAGATATCCGTCAGCTCTT GCATCGTTCGAGCAAATCGTGAACTTTGCACACGGGAAAAGGATAGCGTTGTTTCTGGACTACGACGGGACTCTTTCACCGATTGTTGACAACCCTGATT CCGCGTTCATGTCTAACGATATGCGATCTACAGTAAAAAGAGTTGCGAAGTACTTCCCTACCGCAATCATTAGTGGAAGAAGCCGTGACAAGGTCCACGA GTTTGTTGGTCTTAGTGAACTTTACTATGCCGGCAGCCATGGTATGGACATTATGGGTCCTGTTAGAGAATCTGCATCTGATGTTAACTTGTTCCAGCCC GCTAGTGAATTTGTGCCTATGATCAACGAGGTCTTCGATTCCCTACTGGAGAGCACTAGAGACATCAAAGGAGCTAAGGTTGAGAACAATAAGTTCTGCG TCTCTGTGCATTATAGAAACGTGGATGACAAGTATTGGGACGTAGTTGCGAGAGTTGTCGAGAAAGTCATCGAAAACTATCCACAACTCCGGTTGACACA CGGGAGGAAGGTTCTCGAGATCCGACCGGTGATCGACTGGGATAAGGGGAAAGCCGTGACCTTTCTTCTCGAATCTCTTGGCCTAAGCAACCGTGACGAT GTTCTGCCGATTTACGTGGGTGATGACCGGACGGACGAGGATGCGTTCAAGGTGTTGAGAGATGGGAAATGTGGGTATGGGATATTGGTGTCATCTGTGC CTAAGGAAAGCAACGCATATTACTCTCTCCGAGACCCTTCCGAGGTGATGGCGTTTCTTCAGTCTCTAGTGATGTGGAGGAAGAAGAAGACCGAGTGTTG CGCTAGGTAG
AA sequence Show only first row Show all	>Lus10031146 pacid=23151181 polypeptide=Lus10031146 locus=Lus10031146.g ID=Lus10031146.BGIv1.0 annot-version=v1.0 MDLKPTHASPVLTDSAPVPKSRLHSTMLPCPVATFSPNLCLTVPRKKTGLLDDVRSSSWLDAMKASSPPPKRLTRDQSNEHTLPDDICYLNWLLRYPSAL ASFEQIVNFAHGKRIALFLDYDGTLSPIVDNPDSAFMSNDMRSTVKRVAKYFPTAIISGRSRDKVHEFVGLSELYYAGSHGMDIMGPVRESASDVNLFQP ASEFVPMINEVFDSLLESTRDIKGAKVENNKFCVSVHYRNVDDKYWDVVARVVEKVIENYPQLRLTHGRKVLEIRPVIDWDKGKAVTFLLESLGLSNRDD VLPIYVGDDRTDEDAFKVLRDGKCGYGILVSSVPKESNAYYSLRDPSEVMAFLQSLVMWRKKKTECCAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	2.4	0.9663
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	4.5	0.9639
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	5.7	0.9619
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	6.3	0.9557
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	7.5	0.9632
AT4G39230			NmrA-like negative transcripti...		Lus10042311 [exp]	7.7	0.9533
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	8.4	0.9586
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	8.8	0.9593
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	9.5	0.9558
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	10.5	0.9612

Compare expression of checked genes

Lus10031146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.