Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62390 253 / 7e-80 ATBAG7 BCL-2-associated athanogene 7 (.1) AT3G29310 52 / 4e-07 calmodulin-binding protein-related (.1) AT2G46240 44 / 0.0001 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031724 [exp] 597 / 0 AT5G62390 334 / 1e-111 BCL-2-associated athanogene 7 (.1) Lus10038064 [exp] 71 / 4e-13 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10026469 [exp] 68 / 4e-12 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126000 [exp] 368 / 2e-125 AT5G62390 108 / 7e-26 BCL-2-associated athanogene 7 (.1) Potri.015G126800 [exp] 359 / 5e-122 AT5G62390 311 / 1e-102 BCL-2-associated athanogene 7 (.1) Potri.017G091100 [exp] 66 / 1e-11 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1) Potri.002G166300 [exp] 55 / 8e-08 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031147 pacid=23151027 polypeptide=Lus10031147 locus=Lus10031147.g ID=Lus10031147.BGIv1.0 annot-version=v1.0 ATGAGACGATCAAGCCGAGTCGAGATCTTCGACCCATTTTGCTTCCCTTCTCCTTCCTCCTTCTTCCTCAACGAACCCTCCATTTTCCCTTTTCCAGCTG CCTCCTTCATCCATGAAGAACTTCTCCTTCCTCCTACTCCGTCGTTCGAGCTCTTCAAAACAGTGACGGATCTGATCCAGGTGGAGAACACGCCGTCGTA CTGCTCCTACAAGCGGATCCACCACCAGAAGCCGGCTTCCCAGGATTTGTACCTGCAGACGCTCTCCGAGCGAGTGAGCTCACTCGAGTCGAAGTTCGAG CAGCTGCTGGTCAAGAGTAAAAAAGGAGGAGGGGACCGGAAGTACACGTGGACGGCTGAGATCAAGGACCCGGTGGAGAGGAAGTACAAGTGGGTGGCGG AGATCAAGGCGGCGGAGGAAGAGGAGAAGAAGAAGGTGGTGGTGAAGAAGGTTGCTTCGGCTACGGCGGCGGAGAAGAAGAAGTATAGGTGGACGGCGGA GATCAAGGGGAAAGGAGAAGAATGGAAGAAGTACAGCTTCGAAGTATCCAGCGGCGAGGAGAAAAGCGGGAAATCGGAGAAGAAGGAGGAAGTGAAGAAG GTGAAGAAATCGGAAGAGAAGAAGAAGAAGCCGACCAACAATGTTCGTGTTGTGGAGATTGACGAGCCTGATTCTGATCATGGAGTCATCGTTCTCCGTC AGGCGTTTGCAAAGAGAGCCGGAGCTATGAGGACGTTGAAGGGGAAGAAGAAGGAGCTGTCTCCACAAGATGCTGCATTGTTGATCCAGATCACTTTCAG GGCTTATCTGATCAGGAGGTCGCAGGCTCTTCGTGCTCTAAGAGAGCTGGCGATTGCCAAAGCTAAGTTGAAGGAGCTCAGGGCTTTGTTCAACAATTTC TCTTACCGTCGCCAGGTTTCCAAGGATGCAGTTGAGCGCCAGAGGTTCTCTGAGAAGATCATTGTCCTGCTCCTTACTGTTGATGCCATTGAGGGAGCTG ATCTGATGGTACGAGGCTCCAAGAGGTCGATGGTGGACGAACTCGAAGCAATGCTGGAAGTCGTCGAGCCACAGCCCGCTCCTGGAGGAGGAGGGGGGAG GTCACTGTCGATGAGAAGGCGAACATTCGACATGCCAGATGGCGAAATCAGGAGGGAGATCGCTGAAGGAGTGGCGCAGGTCGTCCAGATGCTTGAAGAA GAGGAGAACGCCTGA
AA sequence Show only first row Show all	>Lus10031147 pacid=23151027 polypeptide=Lus10031147 locus=Lus10031147.g ID=Lus10031147.BGIv1.0 annot-version=v1.0 MRRSSRVEIFDPFCFPSPSSFFLNEPSIFPFPAASFIHEELLLPPTPSFELFKTVTDLIQVENTPSYCSYKRIHHQKPASQDLYLQTLSERVSSLESKFE QLLVKSKKGGGDRKYTWTAEIKDPVERKYKWVAEIKAAEEEEKKKVVVKKVASATAAEKKKYRWTAEIKGKGEEWKKYSFEVSSGEEKSGKSEKKEEVKK VKKSEEKKKKPTNNVRVVEIDEPDSDHGVIVLRQAFAKRAGAMRTLKGKKKELSPQDAALLIQITFRAYLIRRSQALRALRELAIAKAKLKELRALFNNF SYRRQVSKDAVERQRFSEKIIVLLLTVDAIEGADLMVRGSKRSMVDELEAMLEVVEPQPAPGGGGGRSLSMRRRTFDMPDGEIRREIAEGVAQVVQMLEE EENA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031147 [exp]	0	1
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	2.4	0.9282
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	4.5	0.9070
AT1G19990			unknown protein		Lus10033141 [exp]	4.7	0.9169
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	6.5	0.9148
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	8.9	0.9119
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	12.2	0.9055
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	13.5	0.9051
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	15.5	0.8999
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	15.5	0.9034
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	16.0	0.8976

Compare expression of checked genes

Lus10031147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.