Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67150 269 / 2e-85 HXXXD-type acyl-transferase family protein (.1) AT3G50280 239 / 5e-74 HXXXD-type acyl-transferase family protein (.1) AT5G42830 239 / 7e-74 HXXXD-type acyl-transferase family protein (.1) AT5G07860 233 / 2e-71 HXXXD-type acyl-transferase family protein (.1) AT3G50300 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) AT3G50270 220 / 2e-66 HXXXD-type acyl-transferase family protein (.1) AT5G07870 215 / 2e-64 HXXXD-type acyl-transferase family protein (.1) AT5G67160 209 / 2e-62 EPS1 ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1, HXXXD-type acyl-transferase family protein (.1) AT5G38130 209 / 5e-62 HXXXD-type acyl-transferase family protein (.1) AT5G07850 206 / 7e-61 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031725 [exp] 612 / 0 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 426 / 2e-146 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 242 / 2e-74 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 209 / 5e-62 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 209 / 5e-62 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 201 / 8e-59 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 171 / 2e-48 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 164 / 2e-45 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 163 / 7e-45 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057200 [exp] 330 / 3e-109 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 329 / 9e-109 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 325 / 2e-107 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 230 / 3e-70 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 227 / 4e-69 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 228 / 6e-69 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 227 / 1e-68 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 227 / 1e-68 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 226 / 3e-68 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 221 / 6e-67 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10031148 pacid=23151068 polypeptide=Lus10031148 locus=Lus10031148.g ID=Lus10031148.BGIv1.0 annot-version=v1.0 ATGGCTTTGAGTTTGAGCTCTCACCCAAACCCAAGAACGCCGGACACCAGAGTTCGAATCCTCTCAACGGAGATAATCCACGCCAAAAACACTCAAACTC CTCTCCAACGGATCCCTCTCACCCCCCGCGATCTCATCCCTCTCACCGCCGGCGCACGCTCTTCCGATCTCGTCGGAACAATCCAAAAGGGACTCCTCTA CCGAGACCCAACAAATCATCCCATCTCCCGTCAAACCTTCATCCAAAACATCAAATCCGCCTTCACCAAAGCTCTCTCCCTCCACCACCCCTTCGCCGGC CGCTTCACCGCCGACGAACACCCCGACGGAACCGCCACCGTCTACATCGACTGCAACGATACCGGATGCCCGTTCCTCCACGCCGTCGCAGACGGCGTCA CCATCGACGAAGCTCTTCGCCAACCCTTCCCCGTCCCTCCCGCTCCCGTCCTCTGGTCGTTCTTCGCCTACAGCGACGTCAAAAACTACCACGGATTCAC CAAGCCGCTGATGTCGATCCAGATCACCGAGCTCGTCGACGGAGTCTTCGTCGGATGGACGATTAACCACGCCGTCGCAGACGGCACCACCCACTGGAAC TTCCACCGCATCTGGTCCAATATCTGCCGCGGATCTGGAAATTACTCCCCGCCGGTGTTCACCAGAGAGACGCCCCTCGAGGTGATGAATAAAGAAGTCA GAGTCCCCTGGGCGAAAATTCGAGACTTCAACGAGGACAATCTCGTCACTCCACAATTAAAAGAAGGTGTATTCCACTTCAGCCGCGCAAAAATCGCCGA ATTGAAAGCAAAAGCCATCGCTGAATTATCCGAATCTCGTCAGATCTCGTCTCTCCAAGTTTTAATCTCTCACCTATGGAGAGCGGTGACGAGGAGCCGT ACGGATCCGGATCCGGAATCGGAGACGCGGTTCGTGATTCAGGCGGGGTTTCGAGGCCGGTTCGATCCCAAGTTCCCGGCTCATTACTTCGGGAACGCGA TCGGGGGGAGGACGACGACGATGAAGGTGAAGGATCTGGTGGCGGAAGGGAGTTTGGGACGCGTGGCGGCTGAGGTTAACAAGGTGGTAGCGGAGACGAC GGACGAGAAGCTTATAGAAGCGGTGGAGAATTGGATTAAGAAACCGGACATGAGAGGGCTGGGGGAGTTTACTGAGGGAGGGTTGATGTTGAGTGGCTCC CCGAGATTCGATGCCTACGGGACGGATTTCGGGTGGGGGAAGCCGGTGGCGGTGAGGAGCGGCTGGGCGAATAAATACGACGGGAAGGTGACGGTTTATC CGGGGCCGGAGTTGGGGAGTATGGGGTTCGAGATTTGCTTGTCGCCGGAGTGTTTGGATCGCCTGAGATGCGATTCGGAGTTCATGGCTGCCGTCAGTGA ATGA
AA sequence Show only first row Show all	>Lus10031148 pacid=23151068 polypeptide=Lus10031148 locus=Lus10031148.g ID=Lus10031148.BGIv1.0 annot-version=v1.0 MALSLSSHPNPRTPDTRVRILSTEIIHAKNTQTPLQRIPLTPRDLIPLTAGARSSDLVGTIQKGLLYRDPTNHPISRQTFIQNIKSAFTKALSLHHPFAG RFTADEHPDGTATVYIDCNDTGCPFLHAVADGVTIDEALRQPFPVPPAPVLWSFFAYSDVKNYHGFTKPLMSIQITELVDGVFVGWTINHAVADGTTHWN FHRIWSNICRGSGNYSPPVFTRETPLEVMNKEVRVPWAKIRDFNEDNLVTPQLKEGVFHFSRAKIAELKAKAIAELSESRQISSLQVLISHLWRAVTRSR TDPDPESETRFVIQAGFRGRFDPKFPAHYFGNAIGGRTTTMKVKDLVAEGSLGRVAAEVNKVVAETTDEKLIEAVENWIKKPDMRGLGEFTEGGLMLSGS PRFDAYGTDFGWGKPVAVRSGWANKYDGKVTVYPGPELGSMGFEICLSPECLDRLRCDSEFMAAVSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	0	1
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	2.6	0.9431
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017389 [exp]	3.6	0.9190
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	3.7	0.9427
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035463 [exp]	4.0	0.9217
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	4.9	0.9275
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	5.5	0.9199
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	9.3	0.9323
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	10.2	0.9232
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	11.6	0.9211
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	12.6	0.9240

Compare expression of checked genes

Lus10031148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.