Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50280 283 / 5e-91 HXXXD-type acyl-transferase family protein (.1) AT5G67150 280 / 2e-89 HXXXD-type acyl-transferase family protein (.1) AT3G50300 267 / 1e-84 HXXXD-type acyl-transferase family protein (.1) AT3G50270 257 / 8e-81 HXXXD-type acyl-transferase family protein (.1) AT5G67160 250 / 3e-78 EPS1 ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1, HXXXD-type acyl-transferase family protein (.1) AT5G42830 239 / 1e-73 HXXXD-type acyl-transferase family protein (.1) AT5G38130 236 / 1e-72 HXXXD-type acyl-transferase family protein (.1) AT5G07860 228 / 1e-69 HXXXD-type acyl-transferase family protein (.1) AT5G07870 225 / 2e-68 HXXXD-type acyl-transferase family protein (.1) AT5G07850 221 / 6e-67 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031148 [exp] 426 / 2e-146 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10031725 [exp] 290 / 1e-94 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 245 / 1e-75 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 232 / 1e-70 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 219 / 1e-65 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 211 / 1e-62 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 163 / 2e-45 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 162 / 2e-44 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 161 / 3e-44 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057100 [exp] 363 / 5e-122 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 360 / 6e-121 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 350 / 7e-117 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 236 / 2e-72 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 234 / 5e-72 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 233 / 5e-71 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 229 / 1e-69 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 224 / 5e-68 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.012G144500 [exp] 155 / 6e-42 AT5G23940 590 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.015G147300 [exp] 151 / 7e-41 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10031149 pacid=23150960 polypeptide=Lus10031149 locus=Lus10031149.g ID=Lus10031149.BGIv1.0 annot-version=v1.0 ATGGTGAACGATGATGTCAGAGTTCAAGTTCTCTCCACAGATCTAGTCCACACCAACAACAAAAACACACAAGAAAGGATTCCTCTGTCCCCGTGCGACC TCCGCCTCCTTCTCGTCGGAACCATCCAAAAGGGACTTCTCTTCCGCAAACCCGACGCGGCGGCTAACCAAACCACCGCCACCGCCGCCTTGGTCGACAA CTTGAAATCCTCCTTCTCCGCCGCCCTCGCCTTGTTCTACCCATTCGCTGGCCGCCTATCCGCTGACGAACACCCCGAAGACGGCACCGCCACCGTGTAC ATCAACTGCAATGACGCCGGAGCTCCGTTTATACACGCTGTTGCAGACGGCGTCTCCGTCGCCGACATCGTAGACCCCGTTTACGTCCCTTCCCTTCTCT GGTCCTTTTTCCCGCTCAACTGGCTCAGAAACTACCACGGGTTCGAGCATCCATTGGTCGCCGTCCAGGTCACTGAGCTCTCCGACGGGATATTCGTCGG CTGGACGATTAGTCACGCAATCGCTGACGGCGCCACCATCTGGAAGTTCGTCAAATTCTGGTCCACACTCTGCCGCAAAGGCGCCGGCGCCATCGGTGCA CCGGCGTCGCCTGTATTTTCCCGAGACTGGTTTATCCACGAGAAGCATCTCCCAATCAAGATCCCTATCACGAAAATCAAAGAGTTTGAAGACGAGGGTA AAATCGTCTTTCCGCCGCTGAAGGAACGGGTCCTGCACTTCAGCCGCCAGAAACTCGAAGAGTTGAAAGCACGCGCCAACGCCGAAGCCGCCGGCGCCAA AATCTCGTCTCTCCAGACGCTAATCTCTCACTTATGGAGGGCGGTGATTCGAAACGGCGGCGGCGGCATGAAGAAGAATATTCCAGACCCGGATTCGTCG GAGGAAGAGGCTGCATTTGTTGTTCAGGTGGGATTCCGGTCGAGGTGGGTCCCGGACGACTACTTCGGAAACGCTGTGATTACGTGGCCGATAGTGGTTA AGTTGAAAGACCTTTTGGGACACGCGGCGAATAATAAAGGATTGGGACACGTGGCGGCGGAGGTGAACAAAGTGGTGACGGGGCTGACGGACGTGAAGCT GAAGGGAGCGGTGGAGTCGTGGATCGAGAATCCAAAGATGCCGACGTTGAGTGGTTTGGTGGCCAGGGGGATGGCGCTGAGTAGCTCGCCGAGGTTCGAC GTTTACGGGAACGATTTCGGGTGGGGGAAGCCGGTGGCGGTGAGGAGCGGAGCAGGGAACAAATTCGACGGGAAGCTGACGGTGTATCCCGGAGCTGAGA ACGGGAGCGTCGACGTGGAGATTTGTCTATCGCCGGAGACGGCGGAGCGTCTGGAAAGTGATACGGAATTCATGGCTGCATTGGGTTAA
AA sequence Show only first row Show all	>Lus10031149 pacid=23150960 polypeptide=Lus10031149 locus=Lus10031149.g ID=Lus10031149.BGIv1.0 annot-version=v1.0 MVNDDVRVQVLSTDLVHTNNKNTQERIPLSPCDLRLLLVGTIQKGLLFRKPDAAANQTTATAALVDNLKSSFSAALALFYPFAGRLSADEHPEDGTATVY INCNDAGAPFIHAVADGVSVADIVDPVYVPSLLWSFFPLNWLRNYHGFEHPLVAVQVTELSDGIFVGWTISHAIADGATIWKFVKFWSTLCRKGAGAIGA PASPVFSRDWFIHEKHLPIKIPITKIKEFEDEGKIVFPPLKERVLHFSRQKLEELKARANAEAAGAKISSLQTLISHLWRAVIRNGGGGMKKNIPDPDSS EEEAAFVVQVGFRSRWVPDDYFGNAVITWPIVVKLKDLLGHAANNKGLGHVAAEVNKVVTGLTDVKLKGAVESWIENPKMPTLSGLVARGMALSSSPRFD VYGNDFGWGKPVAVRSGAGNKFDGKLTVYPGAENGSVDVEICLSPETAERLESDTEFMAALG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	0	1
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	1.0	0.9893
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	2.8	0.9703
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	2.8	0.9512
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	3.9	0.9660
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	4.5	0.9653
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	4.9	0.9319
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	5.5	0.9645
AT1G45688			unknown protein		Lus10029743 [exp]	6.0	0.9583
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	6.5	0.9438
					Lus10024121 [exp]	7.7	0.9450

Compare expression of checked genes

Lus10031149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.