Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05010 114 / 2e-29 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT2G30830 114 / 2e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 110 / 8e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 109 / 1e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 108 / 1e-27 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G06620 109 / 2e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G77330 108 / 2e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19000 107 / 1e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 106 / 3e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G49630 105 / 3e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024230 [exp] 211 / 5e-67 AT3G19000 149 / 3e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10023602 [exp] 203 / 8e-64 AT3G11180 158 / 5e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10000857 [exp] 122 / 3e-32 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028678 [exp] 113 / 5e-29 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 113 / 1e-28 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 112 / 2e-28 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 111 / 4e-28 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022192 [exp] 109 / 1e-27 AT5G43440 372 / 1e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10021203 [exp] 108 / 3e-27 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069200 [exp] 201 / 6e-63 AT3G19000 147 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G078600 [exp] 132 / 2e-36 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G182700 [exp] 132 / 3e-36 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G003000 [exp] 115 / 4e-30 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.014G159000 [exp] 113 / 3e-29 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 112 / 4e-29 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 110 / 3e-28 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.017G048700 [exp] 108 / 3e-27 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 108 / 4e-27 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 107 / 6e-27 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031150 pacid=23151146 polypeptide=Lus10031150 locus=Lus10031150.g ID=Lus10031150.BGIv1.0 annot-version=v1.0 ATGGCCTACAACTACCCGGTGATCGATCTGGCCCCATTCCTCACCAGCTCCGGGGATGCCAAGAAGAAGGCGGAGGTGATTGAGAAGCTGAGGGAAGCTT GCTCCGACTATGGCTTCTTCGTGGCGGTCAACCACGGCATCCCGGACGAGACCATGGACAAAACCATGGACGTGACCATAGATTTCTTCAACCTCGATTT GGACGAGAAACTCAAAATCACCACCCCGCCGGGCGCTCCTCTCGCCGCCGGCTACCGTCACAAGGAGACAATGGAGGAAATGTGGTGGAAATTGGATGAA GCGGCGCAGGTGGTACAGAAGTTGTTGAACGAAGCTCTGAGACTCCCAGAAGGGACGTTGGCCAAGTACAACGACAACAGGGGGACCGACATTCTGTTGG GATTCCACTACTTGCCGGCGACGGAGACCGAAAAGACGGCGGTCAACGCACACAGGGACAACGGTCTCTTTAGTTTGGTGTTCGAGAATGAAGTTGAAGG ACTCGAGTTTCTAAAAGACGGCGAGTGGATTCCCATCGATCCCATCCCCCATTCCCTCGTTATCAACGTCGGCGACGCCCTCCAGGCATTGAGCAATGAC AAGATGAAGAGCCCGACCCACAGGATTTTGGCGCAGCCGGGGAAAAGCCGATATGCATTTGTGTACGGGTACATGGTAGCAGAAGAGAAGTGGGTTGAGC CGATGCCTGAGTTGATCGGTCAGACCAACGAGTCGCCCAAGTTCAAGAAGTTCAACATCAAAGAGCACATGGCGCTCAAGCAAGTGTTCAAGAACCCTCC TCCTCACTGGAACGACGTCGTCGGTGTTCATTACCATGCCATCACTCCGTCCGCCGCCGCCGCCGCCAACTGA
AA sequence Show only first row Show all	>Lus10031150 pacid=23151146 polypeptide=Lus10031150 locus=Lus10031150.g ID=Lus10031150.BGIv1.0 annot-version=v1.0 MAYNYPVIDLAPFLTSSGDAKKKAEVIEKLREACSDYGFFVAVNHGIPDETMDKTMDVTIDFFNLDLDEKLKITTPPGAPLAAGYRHKETMEEMWWKLDE AAQVVQKLLNEALRLPEGTLAKYNDNRGTDILLGFHYLPATETEKTAVNAHRDNGLFSLVFENEVEGLEFLKDGEWIPIDPIPHSLVINVGDALQALSND KMKSPTHRILAQPGKSRYAFVYGYMVAEEKWVEPMPELIGQTNESPKFKKFNIKEHMALKQVFKNPPPHWNDVVGVHYHAITPSAAAAAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	0	1
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	1.0	0.9893
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	2.8	0.9522
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	3.3	0.9371
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	4.7	0.9579
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	4.9	0.9579
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	6.9	0.9367
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	6.9	0.9193
					Lus10024121 [exp]	7.5	0.9413
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	7.7	0.9456
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	7.7	0.9494

Compare expression of checked genes

Lus10031150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.