Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 577 / 0 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 560 / 0 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 550 / 0 CYP79A2 cytochrome p450 79a2 (.1) AT5G35917 449 / 1e-153 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G58260 440 / 9e-150 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT1G79370 436 / 9e-148 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G16400 428 / 5e-145 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G16410 427 / 3e-144 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G01280 243 / 1e-73 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 225 / 8e-67 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031726 [exp] 830 / 0 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 793 / 0 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023144 [exp] 752 / 0 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023143 [exp] 742 / 0 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 687 / 0 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023142 [exp] 421 / 2e-145 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031727 [exp] 411 / 2e-140 AT5G35917 216 / 2e-65 "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) Lus10000239 [exp] 402 / 5e-137 AT2G22330 331 / 7e-110 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10012624 [exp] 250 / 4e-76 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055200 [exp] 573 / 0 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157200 [exp] 572 / 0 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 551 / 0 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 261 / 2e-80 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.007G085000 [exp] 235 / 3e-70 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 231 / 2e-69 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 231 / 3e-69 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G045800 [exp] 229 / 9e-68 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.006G033300 [exp] 227 / 2e-67 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G141400 [exp] 226 / 5e-67 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031151 pacid=23150977 polypeptide=Lus10031151 locus=Lus10031151.g ID=Lus10031151.BGIv1.0 annot-version=v1.0 ATGGCGGCCATGAACACCTCCGATGGACTATCCACCGTCACCGTAACCTCCTCTCCAACCACCACCACCACATCCCCCACCGCATTCATAGTCCTCCTCC TTGCCCTTCTCATTTCCACCATCAGCATTGTCTTCAACAACATCAAGAAACGACCCTCCTCCAAGCCAATTATGGCAAACCTCCCTCCGAGCCCGCCTTC CTGGCCGGTCATCGGGAACCTCCCGGAGGTTATAAGGAAGAAGCCCGTAGCGTTCCGGTGGGTGCACCAGGTGATGAAGGAGTTGAACACTGACATATGC CTCATCAACATAGCTGGGACCAATGTTGTCCCTGTGACGGACCCTGCCATCGCCAGGGAAATGCTGAAGAAGCAGGACGCCATCTTCGCACAGCGCCCTG CCTTCTCGGTGGGGAGCCACGGCATAAGCGGTGGCCACTATATGACCACCGTGGTGGCTCCCTACGACGACCACCTGACCAAAATGAGGAAGGTGTTCAC CTCCGAGATCATCTCCCCTGCCCGACACAAGTGGCTCCACGAAAAGCGGGCCGAGGAAGCGGACAACCTGGTGTTCTACGTTAATAACCATAGTGGGGCC GACAAGAGTGTCAACCTTAGGCTCGTCACGCAGCATTACTGCGGTAATGTGATAAGGAAGTTGATGTTCAGTAGGAGGTTTTTCGGGGATCCCACCGCTG ATGGTGGGCCCGGACCGATGGAGATTGACCACGTGGAGGCCGTGTTCGGGGCTTTGAAGTATCTGTATTCGTTCTCCATATCGAATTACTTGCCTTTCCT CAGTGGGTTGGACCTCGATGGTCAAGGGAAGGTGATTAAGGAGGCTAATAAGACTCTTAGGTATTATCAAGACCCGATTATCGACGAGAGGATTCGACAA TGGCGAAGCGGAGAGAGGACAGTGATGGAGGACCTCACCGATGTGTTTGTTACTCTTAAGGATGCTCAGGGGAACCCGTTGCTCTCCCGCGAGGAAATCA CTCACCAAGCCGCGGAAATCATGATAGCGACGGTGGACAACCCGTCAAACGCAGTGGAGTGGGCGCTGGCCGAGATGATAAACAATCCGGAACTCCTAGC CAAGGCGACGGCAGAGATTGATCGAGTCGTGGGTAAAGATCGTTTAGTCCAGGAATCTGACTTGCCAAGCCTCAACTATGTCAAGGCATGTGCAAGGGAA TCGTTCCGGTTGCACCCATTGGCGGCGTTCAATGTCCCCCACGTGGCGAGGGAGGACACTGTTGTCGCCGGATACTTCATCCCCAAGGGAAGTCGCGCCC TGTTGAGCCGCTACGGCCTAGGCCGCAACCCTAAGGTGTGGGCCGACCCACTCAAGTTCGATCCGGAACGCCACCTGCAGAGTGATGAGGAGGTCGTGCT GACAGAGCACGATCTCAGATTTATTTCTTTCAGCACGGGCAGACGCGGGTGCGTGGGCGCTCTGCTGGGCTCGTCCATCACCAACATGTTGCTGGCGAGG CTCATCCAGTGCTTCTCGTGGGCCCCGCCCAACGGAGTCGAGAAGATCGAATTGAGGGAAGCCGAGGACGAGCTGCTCCTTGCGAACCCGCTCGTCGCTT CCGCTACGCCGCGTTTGGCACCCCACTTGTACCCTGCCTTAGCCAAATGA
AA sequence Show only first row Show all	>Lus10031151 pacid=23150977 polypeptide=Lus10031151 locus=Lus10031151.g ID=Lus10031151.BGIv1.0 annot-version=v1.0 MAAMNTSDGLSTVTVTSSPTTTTTSPTAFIVLLLALLISTISIVFNNIKKRPSSKPIMANLPPSPPSWPVIGNLPEVIRKKPVAFRWVHQVMKELNTDIC LINIAGTNVVPVTDPAIAREMLKKQDAIFAQRPAFSVGSHGISGGHYMTTVVAPYDDHLTKMRKVFTSEIISPARHKWLHEKRAEEADNLVFYVNNHSGA DKSVNLRLVTQHYCGNVIRKLMFSRRFFGDPTADGGPGPMEIDHVEAVFGALKYLYSFSISNYLPFLSGLDLDGQGKVIKEANKTLRYYQDPIIDERIRQ WRSGERTVMEDLTDVFVTLKDAQGNPLLSREEITHQAAEIMIATVDNPSNAVEWALAEMINNPELLAKATAEIDRVVGKDRLVQESDLPSLNYVKACARE SFRLHPLAAFNVPHVAREDTVVAGYFIPKGSRALLSRYGLGRNPKVWADPLKFDPERHLQSDEEVVLTEHDLRFISFSTGRRGCVGALLGSSITNMLLAR LIQCFSWAPPNGVEKIELREAEDELLLANPLVASATPRLAPHLYPALAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	1.0	0.9135
AT1G14950			Polyketide cyclase/dehydrase a...		Lus10033397 [exp]	3.7	0.8809
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10032038 [exp]	5.5	0.8882
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	7.9	0.9037
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	8.1	0.9043
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	9.6	0.9031
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	9.7	0.8964
AT2G39170			unknown protein		Lus10028816 [exp]	10.4	0.8474
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10004582 [exp]	11.8	0.7752
AT3G46570			Glycosyl hydrolase superfamily...		Lus10032039 [exp]	13.6	0.8469

Compare expression of checked genes

Lus10031151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.