Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25230 750 / 0 RIN2 RPM1 interacting protein 2 (.1.2) AT5G51450 709 / 0 RIN3 RPM1 interacting protein 3 (.1.2) AT1G65040 105 / 2e-24 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G16090 103 / 5e-23 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT5G20910 50 / 3e-06 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) AT2G04240 48 / 3e-06 XERICO RING/U-box superfamily protein (.1.2) AT5G43200 48 / 6e-06 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT5G47610 47 / 7e-06 RING/U-box superfamily protein (.1) AT2G24480 47 / 1e-05 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G28620 47 / 1e-05 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031728 [exp] 1057 / 0 AT4G25230 843 / 0.0 RPM1 interacting protein 2 (.1.2) Lus10040359 [exp] 102 / 8e-23 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 102 / 9e-23 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10034667 [exp] 53 / 3e-07 AT5G20910 391 / 2e-137 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10017865 [exp] 53 / 3e-07 AT5G20910 389 / 2e-136 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10005818 [exp] 49 / 1e-06 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1) Lus10017383 [exp] 48 / 1e-06 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10019686 [exp] 49 / 2e-06 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10010179 [exp] 49 / 4e-06 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124000 [exp] 832 / 0 AT4G25230 830 / 0.0 RPM1 interacting protein 2 (.1.2) Potri.003G109400 [exp] 798 / 0 AT4G25230 790 / 0.0 RPM1 interacting protein 2 (.1.2) Potri.013G088400 [exp] 103 / 5e-23 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.019G051500 [exp] 100 / 8e-22 AT3G16090 661 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.006G217600 [exp] 52 / 4e-07 AT5G20910 360 / 2e-125 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Potri.011G150800 [exp] 51 / 4e-07 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.007G097500 [exp] 50 / 3e-06 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.001G450700 [exp] 48 / 3e-06 AT3G61460 71 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.013G160000 [exp] 49 / 1e-05 AT5G01960 545 / 0.0 RING/U-box superfamily protein (.1) Potri.007G086300 [exp] 46 / 1e-05 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10031152 pacid=23151109 polypeptide=Lus10031152 locus=Lus10031152.g ID=Lus10031152.BGIv1.0 annot-version=v1.0 ATGGGTGTAAGCTATCTAGCTGTTTCTGCAGTGTCCACTGCTTTCAGTTTTGTGGGTCTCCAGTATCAGACGGGGTTTGCTTTGGATAAACTGCGAGTCG ATGGTTTGATTGGTGAGAATCTCACGAATTTAGAGAATGCCAGCAATGCCCTGGGCCTGCTACTGGGTTCGTATGCCACTGCTGCATTGCTGGCTAATTT CTTGTTCAACGTGTTTATTCTGATCAATCTTTGCCTTAAGAGGGTGAAGATCTTTCCTTTCTCCATGATGATTGAAATTTATGGTTACGGAACTTGTTTT GCATTGCAGAGTATATTCTTTGTGGACTTGTATCCTTCTGAAACTAGGAAACTTGTAGAGCGCCTTGTCAATTATGTTATTTACAAGGGAACCTTTCTTC CGCTGGTTATTCCACCTACTGTGTCCCAAGTAGGGTTGTGGTTGATATGGCTGACCGTCATGTGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGAGATCG ACTTGAACGGTTAAATGCCTCTCCTTCTGCACTGCCATCGATATACTTTCGCGTGTACTCGGCATTGTTGTTTGTCCTTTCTGTCGACCTTTTATGGATA AGGCTATGTTTGGGAATTTATACATCATCCGGTTCACCCATGCTTCTTTTGCTGTTCTTTGAACCCCTCAGCATTGCTTTTGAGACCATGCAAGCTATGT TAGTTCATGGATTTCAGTTGCTCGACATTTGGCATCACCATTCTGCTGGCGACAGTGCTAATTGCCAAAGATTCAAGTTTTTTGATAGCCTAAGAACAGG TTCATTGTGGGAGTGGAAAGGCAGTCTCACTCGAAACGTGGGTTTTGCCCTGGATATGGCAACCCTTTTAATGGCACTTGGCCATTATGTTCATATCTGG TGGCTTCATGGTGTGGCATTTCATCTTGTTGATGCAATCTTGTTTCTGAACATAAGGGCCTTGCTAAGTGCCATCATAAAGCGTGTAAAGGGGTTTATTA AACTGGGAATGGCTCTAGGTGCTCTTCATGCAGCACTTCCGGACGCAACATCTGATGAGCTACGAGCATATGACGATGAATGTGCTATTTGCAGGGAACC AATGGCTAAAGCGAAAAGGCTACATTGCAGTCACCTTTTCCATCTTCCGTGCTTGAGATCTTGGTTGGACCAAGGCTTAAATGACATGTACTCCTGCCCT ACTTGTCGAAAACCTCTTTTCCTCGGCAGAACCGAAAATGAAACTAGTCCTAGAAGTCGAGAAGTCTTAAGCGACGAACAGCTCGCACGTCAAATAAGCG AGCGTGATCGGCAAACCAATCCAGGAAACAACTTTCCTGCTGGTGTGTTGCCCAACCAAGCTCCGAACCCTACGGAGGGGAGCTCTTGGAGAAGTACAGG GCTTGATCCAAGTTGGTTGCCTCCATGGCCTAACCAGGGACTAGACGGAGCCGGACCTTCAAATGCGATCAGGTCCGTCGGATTAGGTCGAGTTCAGATG ATGATGAGACATATCGCTTTGGTAGGAGAAACCTATGCCCAGACTGCCCTCGAGGATGCTGCATGGAGCCTGTGGCCTATGAATCCTTCTCAGGCTACGA CTTCATCCAGTTCGACCGCCCCTCCTCCCACCGTCGGTAGATACCCGGCTGGCACCGGAGGTTTAAACATTAGGACCTCAACACGCCCAGTAAATGACAA CATGGCAAACTTGCTCGCAATGGCCGAGACTGTACACGAAGTCCTCCCTCACATCCCAGACGAGTTAATACTCGAGGACTTGCAGCGGACGAACTCAGTT GCGGTGACTGTGAATAACCTTCTTCTTCAAATGTGA
AA sequence Show only first row Show all	>Lus10031152 pacid=23151109 polypeptide=Lus10031152 locus=Lus10031152.g ID=Lus10031152.BGIv1.0 annot-version=v1.0 MGVSYLAVSAVSTAFSFVGLQYQTGFALDKLRVDGLIGENLTNLENASNALGLLLGSYATAALLANFLFNVFILINLCLKRVKIFPFSMMIEIYGYGTCF ALQSIFFVDLYPSETRKLVERLVNYVIYKGTFLPLVIPPTVSQVGLWLIWLTVMCSLKMFQALARDRLERLNASPSALPSIYFRVYSALLFVLSVDLLWI RLCLGIYTSSGSPMLLLLFFEPLSIAFETMQAMLVHGFQLLDIWHHHSAGDSANCQRFKFFDSLRTGSLWEWKGSLTRNVGFALDMATLLMALGHYVHIW WLHGVAFHLVDAILFLNIRALLSAIIKRVKGFIKLGMALGALHAALPDATSDELRAYDDECAICREPMAKAKRLHCSHLFHLPCLRSWLDQGLNDMYSCP TCRKPLFLGRTENETSPRSREVLSDEQLARQISERDRQTNPGNNFPAGVLPNQAPNPTEGSSWRSTGLDPSWLPPWPNQGLDGAGPSNAIRSVGLGRVQM MMRHIALVGETYAQTALEDAAWSLWPMNPSQATTSSSSTAPPPTVGRYPAGTGGLNIRTSTRPVNDNMANLLAMAETVHEVLPHIPDELILEDLQRTNSV AVTVNNLLLQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	0	1
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031728 [exp]	1.0	0.9389
AT4G33440			Pectin lyase-like superfamily ...		Lus10014799 [exp]	4.6	0.8585
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	5.5	0.8655
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028462 [exp]	8.5	0.8432
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	9.5	0.8503
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	9.9	0.8491
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	11.0	0.8545
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	12.0	0.8245
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	14.1	0.8325
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	14.4	0.8402

Compare expression of checked genes

Lus10031152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.