Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47420 639 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT4G25220 532 / 0 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT1G30560 526 / 0 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT2G13100 480 / 8e-167 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) AT4G17550 272 / 6e-85 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) AT2G38060 44 / 0.0003 PHT4;2 phosphate transporter 4;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027210 [exp] 632 / 0 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10038923 [exp] 534 / 0 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10004358 [exp] 524 / 0 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040154 [exp] 521 / 0 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040002 [exp] 453 / 6e-156 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10027211 [exp] 398 / 9e-137 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 162 / 3e-48 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10035532 [exp] 43 / 0.0006 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124200 [exp] 657 / 0 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.003G109300 [exp] 650 / 0 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.001G152300 [exp] 513 / 5e-179 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.018G115000 [exp] 481 / 9e-167 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Potri.003G082366 [exp] 461 / 1e-158 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10031153 pacid=23151143 polypeptide=Lus10031153 locus=Lus10031153.g ID=Lus10031153.BGIv1.0 annot-version=v1.0 ATGTCAGAACAATCATCCAAGCCATATGGAATCCAATTCCTCGAGTGGCTAAACGGCAAAAGGCCCCTATCCTTCAAAACCCACCAAGCCATAGTCTTGA TCCTCACATTCCTATCCTACGCTAGCTACCACGCCGCAAGGAAAACAACCAGCATTGTCAAGAGCGCCCTCGACCCGAAACCCTCCTCGAAATCCAGCTC AATGCATTTTCCGCTCTTCCAGATTACTTATGTAGAAAAACCAACCACGAGATTGACAACCACGGGAGGATGGGCACCGTTCGATGGAGAAAATGGGACG GGACTACTAGGCGAAGTCGACCTGGCATTCCTGGCGTTCTACGCGTTCGGGATGTTTTTCTCGGGACACCTTGGGGACAGGATGAACCTGAGAGTCTTCC TCACCATCGGAATGGTGGGAACGGGACTCTTCACCTCGTTGTTTGGTGTGGGATATTGGGCTCAAGTTCACAACTTTTACTATTTCCTAACAGTCCAAGT GTTGGCCGGTCTGTTTCAGTCGACCGGTTGGCCCTCGGTCGTGGCCGTGGTAGGGAATTGGTGTGGGAAGAAGAAGAGAGGGTTAGTGATGGGGGTTTGG AATGCTCACACCTCGGTTGGGAACATTTCGGGATCGTTGATTGCTGCCGCCATGTTGAGTTACGGGTGGGGTTGGTCTTTCGTTGTGCCCGGTGTGGTTA CTGGGTTGGTGGGGTTGGTTGTGTTCTTGTTCTTGCCGGTTAGTCCCTTGTTGGTTGGGGTTGAAGTTGTTAAGGGTGTGGATGAACCTTTGATAATGTG TGAAGAGAAAGATGAAGGTGATAATGTTGATGAAGCTGTAGGGTTTATTGAGGCATGGAGGATTCCTGGTGTTGCTCCTTTTGCTCTTTGCCTTTTCTTT GCCAAATTGGTGGCTTACACTTTCCTCTATTGGCTCCCTTTCTACATTAGCCACACAGCGATCGATGGGAAATACCTCTCGATCGAGACCGCCGGGAACC TATCTACTCTATTCGATGTGGGAGGCGTAGTCGGAGGAATCCTAGCTGGGCACATCTCCGACCGCCTTGACGGGAGGGCAATAACGGCGGCAAGCTTCAT GTACTGCGCGATTCCAGCCCTGTACTTGTACCGAATCTACGGTTCCATCTCACTGACGACCAACGTGTGTCTCATGTTGTTGACGGGAGTGTTCGTTAAC GGTCCCTACGCGCTCATAACAACTGCAGTATCGGCCGATTTGGGTACACACAGCTCATTGAGAGGTAACTCAAGAGCATTGGCTACAGTCACAGCCATAA TCGACGGGACCGGTTCGGTTGGGGCAGCGATCGGGCCGTTGCTGACCGGGTATATATCAGCTAATAGTTGGGGTGCGGTTTTTGTCATGTTGATGGTTGC TGCCTTTGTGGCCGGGTTGCTGTTAACTAGGCTTGTTGTTGCCGAGGTTGGTGCTAAAATTGTCGAGTCTAGGTGTGAGGCAAGTTCGACAATTGATGTT TGA
AA sequence Show only first row Show all	>Lus10031153 pacid=23151143 polypeptide=Lus10031153 locus=Lus10031153.g ID=Lus10031153.BGIv1.0 annot-version=v1.0 MSEQSSKPYGIQFLEWLNGKRPLSFKTHQAIVLILTFLSYASYHAARKTTSIVKSALDPKPSSKSSSMHFPLFQITYVEKPTTRLTTTGGWAPFDGENGT GLLGEVDLAFLAFYAFGMFFSGHLGDRMNLRVFLTIGMVGTGLFTSLFGVGYWAQVHNFYYFLTVQVLAGLFQSTGWPSVVAVVGNWCGKKKRGLVMGVW NAHTSVGNISGSLIAAAMLSYGWGWSFVVPGVVTGLVGLVVFLFLPVSPLLVGVEVVKGVDEPLIMCEEKDEGDNVDEAVGFIEAWRIPGVAPFALCLFF AKLVAYTFLYWLPFYISHTAIDGKYLSIETAGNLSTLFDVGGVVGGILAGHISDRLDGRAITAASFMYCAIPALYLYRIYGSISLTTNVCLMLLTGVFVN GPYALITTAVSADLGTHSSLRGNSRALATVTAIIDGTGSVGAAIGPLLTGYISANSWGAVFVMLMVAAFVAGLLLTRLVVAEVGAKIVESRCEASSTIDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	0	1
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	1.7	0.9637
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	2.0	0.9226
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	2.4	0.9328
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	2.8	0.9484
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	3.7	0.9103
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	4.9	0.9149
AT5G49600			Protein of unknown function, D...		Lus10037804 [exp]	4.9	0.8685
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	4.9	0.9101
AT3G43110			unknown protein		Lus10020796 [exp]	5.0	0.9200
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011824 [exp]	5.1	0.8678

Compare expression of checked genes

Lus10031153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.