Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51430 1238 / 0 EYE EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031731 [exp] 1537 / 0 AT5G51430 1333 / 0.0 EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109100 [exp] 1347 / 0 AT5G51430 1269 / 0.0 EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0294 [flax] [poplar] Sec10 PF10191 [flax] [poplar] COG7 Golgi complex component 7 (COG7)
Representative CDS sequence Show only first row Show all	>Lus10031155 pacid=23151118 polypeptide=Lus10031155 locus=Lus10031155.g ID=Lus10031155.BGIv1.0 annot-version=v1.0 ATGATGCTGGATCTAGGTCCGTTCACCGACGAGAAGTTCGATCCGAAGAAATGGATCAACTCCGCCTGCCAGGCCAGGCACCCGCAGGAGTCCCTCGACG ACCACCTCGTCGATCTGGAAATGAAGCTGCAGATGGTCTCCGAGGAGATCGCGGCGTCGCTAGAGGAGCAGAGCGCCGCCGCTCTCCTCCGCGTCCCTCG CGCCACTCGCGACGTTGTTCGCCTCCGAGACGATGCCGTCTCGCTGCGTAGCTCGATCTCGGCAATCCTCCAGAAGCTCAAAAAGGCAGAGGGATCTTCG GCTGAATCGATTGCGGCGCTGGCTAAAGTTGATACGGTTAAGCAGAGAATGGAAGCTGCATACGAAACTCTGCAGGATGCAGCAGGATTAACTCAACTAA GTTCGACGGTGGAGGATGTGTTTGCCAGTGGCGATCTTCCTCGTGCTGCCGAAACTTTAGCCAACATGAGACACTGCCTGTCTGCTGTTGGGGAGGTTGC TGAATTTGCTAATGTCAGAAAGCAACTTGAGGTCTTAGAGGACCGGCTTGATTCGATGGTGCAACCGCGTCTAACAGATGCATTATCCAACCGCAAGGTT GAAGTTGCACAGGATTTACGTGGAATTCTGATGAGAATTGGCAGATTCAAGTCTCTGGAAATGCATTACACTAAGGTCCATTTGAAGCCCATTAGGCAGT TGTGGGAAGATTTTGATGCCAGACAGCAAGCTAATAGGCCTGCAATCGGGAAGAATGAATTTGAGAGGGCGGCAGGCAACAATGACTTGCCAACAGTTCA ATTCTCAAGTTGGTTGCCGAGCTTCTATGATGAACTGCTGATGTATCTTGAACAAGAATGGAAGTGGTGCATGGTTGCGTTCCCTGATGATTACAAAATG CTTGTACCAAAGCTACTAGTTGAGACGATGGCAGCTGTAGGAGCAAGTTTTGTCTCTCGTCTTAACCTTGCCACTGGAGAGGTGATTCCCGAAACAAAAG CACTCTCAAAAGGAATATTGGATATCTTATCGGCAGATATGCCAAAGGGGATCAAGATTCAGACTAAGCACTTGGAAGCACTGATCGAATTGCACAATAT GACTGGCACCTTTGCCAGGAATATTCAACACTTGTTCTCAGAATCTGATCTTCGAGTTCTCATGGATACCCTGAAGGCTGTTTACCTTCCATATGAATCA TATAAACAAAGGTACGGGCAAATGGAGCGTGCCATCCTTTCATCGGAGATAGCTGGAGTAGATCTAAGAGGGGCAGTCACTCGTGGCGTGGGAGCCCAAG GAATCGAACTGAGTGAAACGGTTCGGAGAATGGAGGAGTCTATCCCACAAGTCATTGTTCTGCTTGAAGCAGCCGTTGAAAGGTGTGTTGGTTTTACTGG AGGTTCAGAAGTGGACGAGCTGCTTCTTGCACTCGACGATATAATGCTCCAGTACATCTCTTCTCTTCAAGAAACCCTTAAATCCTTAAGGACTGTGTGC GGAGTGGATGATCTGAAGAAAGACTCGAGTTTAGAAAAGAAAGAAGGAACCCAAACTACGCGTAAAGTTGATTTATCGTCCTCAAATGAAGAGGAATGGT CTATCGTCCAGGGTGCACTGCAGATACTCACTGTTGCAGATTGTTTGGCCAGCAGGTCCTCCGTCTTCGAAGCATCATTGAGAGCAGCTCTAGTTAGACT AAGCACAAGTTTATCCTTCTCTGTATTTGGGTCAAGTTTGGACCAAAACCAGTCACATGGTGTGAACAGTTATGTTGATGGTGAACCTTCATTGGGTGGA AGAGCCGCCTTGGATGTCGCAGCTGTACGTCTCGTTGATGTCCCTGAGAAGGCTAGGAAGCTATTTAACTTATTGGATCAGTCCAAAGACCCTCGGTTTC ACGCGCTTCCACACGCATCCCAGAGAGTTTCAGCATTCTCCGATACAGTAAACGAACTAGTATACGACGTCCTGATATCCAAGGTGAGGCAACGCGTGAG TGATGTATCGAGACTGCCAATCTGGTCGTCGGTGGAAGAGCAGAGCACTTTCCATCTCCCAACCTTCAGCGCTTACCCACAAACCTACGTCACCAGCATT GGGGAATACCTTCTTACTTTGCCCCAACAGTTGGAGCCACTGGCTGAGGGCATCTCAAATGGTGATTCCAACAGTGAGGAAGCCCAGTTTTTCGCAGCTG AATGGATGTTCAAGGTTGCAGAAGGAGCAACGGCTCTTTACATGGAGCAGTTGAGAGGGATTCAATACATAACTGACAAGGGAGCCCAGCAACTCTCAAC AGACATCGAGTACTTGAGCAACGTGCTCTCCGCTCTGTCGATGGAGGTTCCTCTTCCCCTCGCGACGTTCCAGACCTGTCTCTCCACGCCAAGAGATCAA CTCAAAGGCCTCGTAAAATCTGACCAACTCGACGGTCCAACCGCAAATCTCGTCTGTAAAATTCGACGCGTTAGCTTAGACTAA
AA sequence Show only first row Show all	>Lus10031155 pacid=23151118 polypeptide=Lus10031155 locus=Lus10031155.g ID=Lus10031155.BGIv1.0 annot-version=v1.0 MMLDLGPFTDEKFDPKKWINSACQARHPQESLDDHLVDLEMKLQMVSEEIAASLEEQSAAALLRVPRATRDVVRLRDDAVSLRSSISAILQKLKKAEGSS AESIAALAKVDTVKQRMEAAYETLQDAAGLTQLSSTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANVRKQLEVLEDRLDSMVQPRLTDALSNRKV EVAQDLRGILMRIGRFKSLEMHYTKVHLKPIRQLWEDFDARQQANRPAIGKNEFERAAGNNDLPTVQFSSWLPSFYDELLMYLEQEWKWCMVAFPDDYKM LVPKLLVETMAAVGASFVSRLNLATGEVIPETKALSKGILDILSADMPKGIKIQTKHLEALIELHNMTGTFARNIQHLFSESDLRVLMDTLKAVYLPYES YKQRYGQMERAILSSEIAGVDLRGAVTRGVGAQGIELSETVRRMEESIPQVIVLLEAAVERCVGFTGGSEVDELLLALDDIMLQYISSLQETLKSLRTVC GVDDLKKDSSLEKKEGTQTTRKVDLSSSNEEEWSIVQGALQILTVADCLASRSSVFEASLRAALVRLSTSLSFSVFGSSLDQNQSHGVNSYVDGEPSLGG RAALDVAAVRLVDVPEKARKLFNLLDQSKDPRFHALPHASQRVSAFSDTVNELVYDVLISKVRQRVSDVSRLPIWSSVEEQSTFHLPTFSAYPQTYVTSI GEYLLTLPQQLEPLAEGISNGDSNSEEAQFFAAEWMFKVAEGATALYMEQLRGIQYITDKGAQQLSTDIEYLSNVLSALSMEVPLPLATFQTCLSTPRDQ LKGLVKSDQLDGPTANLVCKIRRVSLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	0	1
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	2.8	0.9082
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	4.2	0.8820
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	7.5	0.9021
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	7.5	0.9011
AT1G50120			unknown protein		Lus10040977 [exp]	7.7	0.8986
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	9.2	0.8908
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	9.4	0.8836
AT1G67930			Golgi transport complex protei...		Lus10007329 [exp]	9.8	0.8927
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	10.6	0.8788
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	11.0	0.8979

Compare expression of checked genes

Lus10031155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.