Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51410 307 / 1e-103 LUC7 N_terminus domain-containing protein (.1.2.3) AT3G03340 72 / 1e-13 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1) AT5G17440 70 / 3e-13 LUC7 related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031732 [exp] 412 / 4e-145 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10038924 [exp] 365 / 2e-126 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10027212 [exp] 363 / 7e-126 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10026846 [exp] 71 / 2e-13 AT5G17440 522 / 0.0 LUC7 related protein (.1) Lus10020225 [exp] 70 / 6e-13 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124300 [exp] 367 / 4e-127 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.003G109000 [exp] 356 / 6e-123 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.019G055000 [exp] 76 / 3e-15 AT5G17440 438 / 6e-153 LUC7 related protein (.1) Potri.013G084800 [exp] 71 / 2e-13 AT5G17440 473 / 2e-166 LUC7 related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03194 [flax] [poplar] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Lus10031156 pacid=23150996 polypeptide=Lus10031156 locus=Lus10031156.g ID=Lus10031156.BGIv1.0 annot-version=v1.0 ATGGACGCCCAGAGAGCTATGCTAGACAGCCTCATGGGCGCAGATCGTAATTTGACGGAGCACGAGAAGAAGGATTACAAGGAGATCACTTGGGATTCCA AGGAGGTTTGTCCTTACTACATGGCTCGATTCTGTCCTCACGATCTCTTTGTCAACACCAAGAGCGATCTCGGGCCGTGTGAGAGAGTTCATGATCCTAA GCTGAAAGAAAGCTTTGAGAAATCTCCGAGGCATGACAAATTCTTGCTTAAATTCGAGTCCGACCTTGCTCAACGATGTGACAAATTGGTAATGGATTTG GATAGAAGAGTTAGGCGTGGGCGTGAACGGCTTGCTCAAGATGATGAACCGATGCCGCTTCCTCCACTTTCAGCGGAGAAGTCCGAGCAGTTGGCTGTTG TGGAAGAGAAAATAAAGAACTTGCTGGTGCAAGTGGAGGATCTTGGTGAAGCTGGGAAAGTAGATGAACTGAATACTGAGAAAGCTCTGATTCGAGCTCA GAACGGGAAATTACCAGTGATCCCACAGGATAAAAAGATGGCATTGTGCGAAATTTGCGGTTCGTTTCTGGTAGCGAATGATGTTCAGGAGAGAACGCAG TCTCATTTAACAGGGAAGCAGCACATTGGCTACGGTATGGTTCGTGATTTCATCACTGAATACAAGGAGGCGAGAGAAAAGGCCAAGGAAGAAGAACGGT TAGCTAGGGAGAAAGAAGCTGAAGAAGGAAGGAATCGACGAGGTGAGGAGAATGAATCTGACAGGAGTAGGAGTGTTTCAGGTGAAAGGGATCGGTATCA TGATCGAGACAGGTACAGAGAGCGGGACAGGTACCGTGAACGTGATTATGATAGATCGAGAAACAGGAACGGTGGAAAGGGTTCACGTAATGGAAGGGAT CGGTACCGTGACCCGAGTAGATCACGATCCCCTGCTAGGACCAGTCGCAGGAGGTCCTCTCGAAGTCCGTATTAG
AA sequence Show only first row Show all	>Lus10031156 pacid=23150996 polypeptide=Lus10031156 locus=Lus10031156.g ID=Lus10031156.BGIv1.0 annot-version=v1.0 MDAQRAMLDSLMGADRNLTEHEKKDYKEITWDSKEVCPYYMARFCPHDLFVNTKSDLGPCERVHDPKLKESFEKSPRHDKFLLKFESDLAQRCDKLVMDL DRRVRRGRERLAQDDEPMPLPPLSAEKSEQLAVVEEKIKNLLVQVEDLGEAGKVDELNTEKALIRAQNGKLPVIPQDKKMALCEICGSFLVANDVQERTQ SHLTGKQHIGYGMVRDFITEYKEAREKAKEEERLAREKEAEEGRNRRGEENESDRSRSVSGERDRYHDRDRYRERDRYRERDYDRSRNRNGGKGSRNGRD RYRDPSRSRSPARTSRRRSSRSPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	0	1
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	1.0	0.9011
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030661 [exp]	1.7	0.8869
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	2.4	0.8797
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10029662 [exp]	2.4	0.8931
					Lus10019158 [exp]	2.6	0.8775
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	3.2	0.8809
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	3.3	0.8591
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	4.5	0.8843
AT1G55170			unknown protein		Lus10034321 [exp]	5.3	0.8514
AT1G16916			unknown protein		Lus10032325 [exp]	8.8	0.8420

Compare expression of checked genes

Lus10031156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.