Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 150 / 1e-39 Plant protein of unknown function (DUF247) (.1) AT3G50130 81 / 4e-16 Plant protein of unknown function (DUF247) (.1) AT3G50140 75 / 4e-14 Plant protein of unknown function (DUF247) (.1) AT3G47200 65 / 6e-11 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 65 / 7e-11 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50190 64 / 9e-11 Plant protein of unknown function (DUF247) (.1) AT3G50180 63 / 3e-10 Plant protein of unknown function (DUF247) (.1) AT3G50120 62 / 4e-10 Plant protein of unknown function (DUF247) (.1) AT5G22550 61 / 1e-09 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22540 60 / 2e-09 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026964 [exp] 237 / 6e-72 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 226 / 2e-67 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 215 / 1e-63 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 153 / 3e-40 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 153 / 6e-40 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 152 / 6e-40 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 147 / 6e-38 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 125 / 9e-31 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 65 / 7e-11 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085300 [exp] 193 / 9e-55 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 184 / 8e-52 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 179 / 9e-50 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 174 / 4e-48 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 174 / 9e-48 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 170 / 2e-46 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 164 / 2e-44 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 163 / 5e-44 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 85 / 1e-17 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 79 / 2e-15 AT4G31980 232 / 3e-69 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10031159 pacid=23151023 polypeptide=Lus10031159 locus=Lus10031159.g ID=Lus10031159.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCATCATCAGTGATCAACCCCGCCTTCACAGAACAAAAATGGCTCTCCCAAATCAACTCGACCCTCCAACTAGACCTCCAAACCCTCA CAGAGACCACCGCCTTCAGCATCTTCCAGCTCCCCGACTCGCTCAAATCCACCAAACCAGAATCCTACTCTCCACAGCTGATCGCCATTGGACCCATCCA CCAGTTCAACCCGGAGCTCTACACTGTGCAGACGTTCAAACTCGCCGCAGCCCAAAGGTCATCACAGGGTCTCGATTTCCAGCCATTGGTTGATCACATT TCCAAATTCGTACCCAGAATTCGATCCTCCTACGACAAGCATTTCGACCTCGGCGACCAAGCGATCGGCTGGATCGCAACCATCGATGCCTTGTTCTTGC TCGATCACCTCCGGGGAGATCGAAGCGGTCGAACGAGTCACATTTTTCGTGACTCGTCCGACCGTAAAGTCAATACGGACTCTATCCGGCGAGATTTATT GAAGCTGGAGAATCAGATTCCTCTATTTTTGCTGAACAATTGCTCTGATTTCGGTTCCGGTACAGGTTCCGGAATCAGAATCGGAAGACAGGACTGTAAT TTACCCCAACTGCTTGTAAATTTCTGCCGTGAGGTTTCTCCGTTTGACATCCACGAAATTTATCCCGACGACGGAATTGAGCCGCAACATTTATTGGATC TTCTCTACCAAATGATATGGCTGAAACAGAGGAGAATCATCAACCCTCAAACAAGGATCGCAGTTCAATCGGCGGAATTCGTCGCTAATCTATGGGAAGA AGCGAAGAATTCGGACAATATCGGACTGCTTGGATCCGTTGCTGCCCCCGTAGATCGTGTCATTCGGTTATCGAAAACCCTAGGCATCTCCGAGAAGTTC CGGAGAGTCCTCGAAGAACAGGAAGGAGAAGTCTTGATTCCGACCGCTTCGCAATTGAAAGCAGTTGGGATCGGCTTCGATTGCACGAGGGACGGCATTC GAAACTTATGTTACAATGCCTCCTCGAAGACGCTCTGGGTTCCGGTGTTCACATGGAACCCGAGCTGCTGCGAGGCGGTCGTGAGGAACTTACTGGCGTA CGAGTCGATGGCGAAATCGGAGAACTTGGTTGTGAATCGTTACGCTGAGATCATGAGCTGCTTAGTGAAGAGTGTTGCAGATGTGAAGCTGTTGAGAGAC AATGGGATCATCTCGTTCACAGGGGAAGAAGAGGATGATGCGGCAGTTGTGGAGCTGTTCAAGGGAGTTGCAGCCATTGATGCGTTTGATCATCGGAAGG ATAAGACGATGTTTGACGATCATGTGAAGGCGGTTAACGAGCATTACAGTAGCCATAGGAGGATCAAGATGGGGAAGATGGTGAAGAAGTACGTCAAGGT GTCGTGGGATGTCGCTAAGGTTATGGCTGCCGTGTTGCTGCTGGTGATGCTTGCTGTTCAGACTTTCTGTGATGTTTACAACTGTAAAGGGAGCTCTACT GCTATGGTGTTTGGTGGATGGAGGAGTGCTTGA
AA sequence Show only first row Show all	>Lus10031159 pacid=23151023 polypeptide=Lus10031159 locus=Lus10031159.g ID=Lus10031159.BGIv1.0 annot-version=v1.0 MASSSSSVINPAFTEQKWLSQINSTLQLDLQTLTETTAFSIFQLPDSLKSTKPESYSPQLIAIGPIHQFNPELYTVQTFKLAAAQRSSQGLDFQPLVDHI SKFVPRIRSSYDKHFDLGDQAIGWIATIDALFLLDHLRGDRSGRTSHIFRDSSDRKVNTDSIRRDLLKLENQIPLFLLNNCSDFGSGTGSGIRIGRQDCN LPQLLVNFCREVSPFDIHEIYPDDGIEPQHLLDLLYQMIWLKQRRIINPQTRIAVQSAEFVANLWEEAKNSDNIGLLGSVAAPVDRVIRLSKTLGISEKF RRVLEEQEGEVLIPTASQLKAVGIGFDCTRDGIRNLCYNASSKTLWVPVFTWNPSCCEAVVRNLLAYESMAKSENLVVNRYAEIMSCLVKSVADVKLLRD NGIISFTGEEEDDAAVVELFKGVAAIDAFDHRKDKTMFDDHVKAVNEHYSSHRRIKMGKMVKKYVKVSWDVAKVMAAVLLLVMLAVQTFCDVYNCKGSST AMVFGGWRSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	0	1
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	2.6	0.9860
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10008092 [exp]	3.0	0.9782
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	4.0	0.9786
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	4.5	0.9713
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	4.7	0.9704
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	6.0	0.9760
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	6.3	0.9753
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	7.5	0.9734
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	8.1	0.9683
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	8.1	0.9600

Compare expression of checked genes

Lus10031159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.