Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47450 694 / 0 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G57180 105 / 2e-23 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10620 87 / 1e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031736 [exp] 948 / 0 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031030 [exp] 116 / 4e-27 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035420 [exp] 115 / 9e-27 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035986 [exp] 84 / 9e-17 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016692 [exp] 65 / 6e-11 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124900 [exp] 798 / 0 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G044700 [exp] 104 / 2e-23 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G010400 [exp] 85 / 4e-17 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031160 pacid=23151056 polypeptide=Lus10031160 locus=Lus10031160.g ID=Lus10031160.BGIv1.0 annot-version=v1.0 ATGGCGACTCAAATTTCGTCTGCATTTCCGTCAACGGTTTCATTACCTCACCGTCTAACGTGCATCAACCCACGATTCGTTCAATTTCAAACGAAGACCA TCCTCACCGTGTGTAAAATTGCGCAGTCGGAGCACAAATCGCCGGTCTCCGATGTCGAAGCTACAGCTCCGGTACCCGACATAGATGGAACAGGAGCTGC TGCTCCGGGACGAGGCGAAAAGTTCCTGGAGCGGCAGAGAGCGTTCGAGGCGGCGAAGGTGGTGATGAAAGATGCTAAGAAGAGTAGGAAGAAGGAGGAT AGAAGTAAGCCTGCGAAGGCGGCGGTGAATACGGCGGTGGCTTCTTGTTACGGCTGCGGAGCTCCGTTGCAGACGTCGGAGGTGGACGCGCCGGGATACG TGGAGGTTGAAACTTATGAGCTGAAGAAGAAGCATCGCCAGCTGAAAACTGTGCTATGTGGGAGGTGTAAGCTTCTGTCTCATGGGCATATGATTACTGC TGTTGGCGGGAACGGAGGGTATTCCGGTGGGAAGCAGTTTGTTACTGCAGATGAGCTTCGAGAGAAGCTGTCTCATTTGCGCCATGAGAAGGCCTTGATC GTCAAATTGGTTGACATTGTCGACTTCAATGGCAGCTTTCTGGCTCGTGTCCGTGACCTTGCAGGTGCGAATCCGATCATATTAGTGATAACCAAGATTG ATCTCCTGCCAAAAGAGACGGACTTTAATTGTGTGGGTGATTGGGTTGTGGAGGCTACTACTAAGAAGAAGCTCAATGTTTTGAGTGTCTACCTCACAAG CGCAAAATCATTAGTTGGGATAACTGGAGTTATAGCAGAGATTCAGAAGGAGAAAAAGGGGCGGGATGTGTACATTCTTGGTTCAGCCAATGTTGGGAAG TCAGCTTTCATTAATGCATTACTGAAGATGTTAGCTGAAAGAGACCCGGCTGCTGCAGCTGCACGGAAGTACAAACCTATCCAATCTGCTGTTCCAGGAA CAACCCTTGGTCCAATTCAGATTAATGCATTCCTCGGGGGAGCGAAATTGTTTGATACACCTGGAGTCCACCTTCACCATAGGCAAGCTGCAGTTGTGAA TTCAGAAGATCTACCTCTCCTTGCACCTCGAAGCCGTCTCAAGGCTCAGATTATTCCTAATGCAATTATTGCTGCAAAAAATGGGATCGCTAAAAAGTTG GAATCTGATGGCTTGAATGGTTTCTCAATTTTCTGGGGAGGTCTTGTCCGCATCGATGTGTTAAAGGTTCTCCCAGAGACATCCTTGATATTTTATGGCC CAAAAGCATTAACGATTCACTTAGTGCCTACTGATCAAGCTGATGAATACTACCAGAATGAAGTTGGAGTTTTGTTAACACCTCCCACTGGAAAAGATAA CTGGAAAGGACTCGAACTCCAGCGCCAACTATGTATAGGTTTCGAAGATGCAGAGAGGCCTGCTAGTGATATAGCCATATCGGGGCTGGGATGGATTGCT GTGGAGCCAGTAAGGAAATCGTCATCATCAACATCTCAGGACTCCAATCTGCAGTTGGTAGAGTCTGCAAAGAAGCTGCATTTTGTGGTTCATGTACCGA GACCAGTAGAGATTTTTGTCCGGCCTCCGTTGCCGGTGGGGAAGGCTGGTTCAGAGAGGTACCAGTACAGAGACTTGACAGACAAGGAAGAGGAAACAAG ACCAAAATGGTACTACTAG
AA sequence Show only first row Show all	>Lus10031160 pacid=23151056 polypeptide=Lus10031160 locus=Lus10031160.g ID=Lus10031160.BGIv1.0 annot-version=v1.0 MATQISSAFPSTVSLPHRLTCINPRFVQFQTKTILTVCKIAQSEHKSPVSDVEATAPVPDIDGTGAAAPGRGEKFLERQRAFEAAKVVMKDAKKSRKKED RSKPAKAAVNTAVASCYGCGAPLQTSEVDAPGYVEVETYELKKKHRQLKTVLCGRCKLLSHGHMITAVGGNGGYSGGKQFVTADELREKLSHLRHEKALI VKLVDIVDFNGSFLARVRDLAGANPIILVITKIDLLPKETDFNCVGDWVVEATTKKKLNVLSVYLTSAKSLVGITGVIAEIQKEKKGRDVYILGSANVGK SAFINALLKMLAERDPAAAAARKYKPIQSAVPGTTLGPIQINAFLGGAKLFDTPGVHLHHRQAAVVNSEDLPLLAPRSRLKAQIIPNAIIAAKNGIAKKL ESDGLNGFSIFWGGLVRIDVLKVLPETSLIFYGPKALTIHLVPTDQADEYYQNEVGVLLTPPTGKDNWKGLELQRQLCIGFEDAERPASDIAISGLGWIA VEPVRKSSSSTSQDSNLQLVESAKKLHFVVHVPRPVEIFVRPPLPVGKAGSERYQYRDLTDKEEETRPKWYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	2.4	0.9639
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	3.0	0.9517
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	3.2	0.9591
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	5.0	0.9164
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	5.5	0.9500
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	7.2	0.9510
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	7.5	0.9412
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	7.9	0.9422
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	7.9	0.9398
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	9.2	0.9322

Compare expression of checked genes

Lus10031160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.