Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 652 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 572 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 448 / 1e-140 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 436 / 6e-136 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 428 / 7e-133 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 418 / 5e-128 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 407 / 4e-124 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G72180 388 / 3e-119 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 382 / 5e-117 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 384 / 3e-116 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031738 [exp] 993 / 0 AT4G08850 425 / 8e-137 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 627 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 615 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 562 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 557 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 539 / 1e-174 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 508 / 3e-163 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 501 / 9e-161 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10011761 [exp] 436 / 2e-137 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108200 [exp] 944 / 0 AT4G08850 678 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 667 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 664 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 663 / 0 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 662 / 0 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 654 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 653 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 650 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 650 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 648 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031161 pacid=23151116 polypeptide=Lus10031161 locus=Lus10031161.g ID=Lus10031161.BGIv1.0 annot-version=v1.0 ATGGCAAGGCCAAACCGATTGTTTCTCTTCTTCATCCTTTCACTCCTTCTATTGTCCTGCTTTCAATGCAGCTTGGCTTCAATCACAGAAGTACAAGCTC TGCTGCAATGGAAACAAGGTCTCAGGAATGAATCCATCCTTCAATCATGGAGGACGACGAACAGGAACGACAATTCCTCAAGCCCTACTCCCTGCAAATG GCTTGGGATAGCTTGTGATGCTGCTTCAGGGAGTGTGACAGAGATAAACCTTTCCTACCTAAACATGACAGGTACTTTGCAGAGCCTGAACTTCTCTTCA TTCCCGAATCTCCTCCGACTCGATCTTAAATACAACCAGTTCACCGGCACCATTCCAGATACCATAAGCTTACTTTCCAAACTCCAGTTCCTTGATCTCT CAACCAATTACCTCACCGGGACGATCCCACTTTCTCTTGCGAATCTCACTCGGGTTACCGAGCTCGACCTTTCGAGGAATGACATCAACGGAACTCTTGA CCCGCGTCTTTTCTCCGGAACTGGCCTCGCTAGTCTGCAGAACTTGCTGATAGAAACCACTGGTGTTGGTGGGAGTATTCCTGAGGAGATAGGAAACCTG AAGAATCTTTCAATTTTGGCATTTGGGGAGAACCAGTTTTCTGGTTCGATTCCTTCTTCTTTGAGGAACTTGACTGAGCTAACAATTTTACGCCTTTATG CTAATCAGCTTTCAGGACCGCTCCCACCGGGTATAGAAAACCTGAGCAAGCTGACCGATATTCGCTTGTTCACGAACAATTTGTCTGGCAATGTACCTCC AGGAATAGGCAACCTTTCTTCATTGACAGTCCTACACCTTGGAGATAACCACTTCACCGGTTTTTTGCCGCAAGAAGTGTGTAAAGGTGGGAAATTGATC AACTTCACAGCCGACGGGAACAACTTCTATGGCCCAATCCCAAGAACCCTCAGGAACTGTTCTTCGCTGTACAGAGCCCGTTTCGAGTACAATCAACTGG AAGGAAACCTGAACCGAGACTTTGGGGTATACCCGAATCTCACTTACATTGATCTGACTGGCAACAATTTGGAAGGGGAAGTCTCTCCACAGTGGGCACA GAGTCAAAGTTTGACATACTTAGCACTTGGTGGGAACAAGTTGACTGGCGAAATCCCAAATGAGATCCTTCAACTGGAGAAGCTAGTGGAACTCGACCTG TCCGCGAACAGAATTTCCGGAGAAATCCCTGCGGACATTGGAAGGTTGTCCAGATTGATGAGTCTAACTCTCAACGGAAATATGCTTTCAGGTCAGATTC CAGTGGGTATAGGGACAATGTCAAGCTTGCAGTATCTGGACCTTTCGATGAACATGTTGACTGGCTCAGTTCCATCTCAGCTTGGAGATTGCTCCAGGCT TCAGCTCTTAAGCCTCAGCACGAACAATCTCAGTGGGAGCATTCCATTTCAAATTGGTAATCTTGTAGCTCTACAGGATCTACTGGATCTAAGCTACAAT TCGTTCACAGGGGGGATACCTTCTCAGTTCAGTAAGCTTACCACTCTGGAGAATTTGAATCTTTCTCACAACAGCCTTGCTGGTTCAATCCCTCCTTCCT TGACAAATCTGTTGAGCTTGATCTCTCTCAATTTCTCCGGCAATCAATTGGAAGGACGGATACCTAATAGCCAAGCATTTCAGTCAGCTCCACCATCTGC TTATTCAAACAACAAAGACCTATGCGGCGAATCGCATACCTTATTGAGATCCTGCGATGATCCGGTCGTCGTTGTCGCTAATCGTCCAAACAAGAGAAGA CAAACAGCAATAATCGCCGGCGCCAGCGCGGCCGGCTTGTTCCTACTCCTCCTCCTTCTCGGAACATTAGCATCTCTCCGCCGCGGAAGGAAATCACGAT TTGTGGCGAGAAAAGACGAAGTTGGATCCGATGACGATGATCCTTCACCTTCCGTCTGCTATCTCAAAAGCAAAATCACTTACCGAGAAATCATCGATTC CACGGAGAATTTCAACGATCGCTACTGCATCGGAGAAGGAGCCACTGGCAAAGTCTACAAAGCTTCAACTTCCGATCAACGCCATCTATTGGCGGTCAAG AAGCTAAATCCTAATCCGATCGCAGGGGAGAATGAGGAGGAGGAGATTTACCAGGAGTTGGAGCTGAAGACTTTTACTAGAGAAGTGGCTGCTCTAACAG AATTGCGCCACCGGAACATCGTCAGGATGTATGGATTCTGCTCTCGCCGGAGCTCCTACTCGTTCCTGGTGTACGAGTACATGGAGAAGGGGAGCTTGGC GGACATTCTGAGGAGCGATAAAGCGGCAGCAGAGGAGCTCGACTGGGGGAAGAGGTTCGAGATCGTTAGAGGAGTCGCCGACGCTCTGACGCACATGCAT CATGCAGTCTCGCCGGCGGTGATTCACCGGGACGTGTCGAGTAAGAACGTGCTGCTGGATTCCGATCTGGTGGCTCACGTCTCCGATTTCGGGACGGCCA AGTTTCTGAAGCCCGATTCTTCCAACTGGACCGCGTTCGCCGGGACTTACGGTTACGCTGCCCCAGAGCTTGCATACACAATGGTGGTGACGGAGAAATG CGACGTGTACAGTTTCGGGGTACTGACGCTGGAAGTTGTGATGGGGAAGCATCCGGGAGAGTTCATAACCTACTTGCAATCGCCGGCCGGCCGGCAGCAG GGCATCCTGCAGCCTGAAGGTATAGCGGATCCGCGGCTACCGTTACCGGCCGTTGTCGACGAGGACGAGGAGGAAGACATCCGACAAAAACTGTCGATAA TGTTGCGAATCGGGTTTTCGTGTGTTGCGACGAATCCGGAGCTCCGGCCAACCATGCGAAGCATTTCTCAACTGCTGGAAACGTTTCATGAGTAA
AA sequence Show only first row Show all	>Lus10031161 pacid=23151116 polypeptide=Lus10031161 locus=Lus10031161.g ID=Lus10031161.BGIv1.0 annot-version=v1.0 MARPNRLFLFFILSLLLLSCFQCSLASITEVQALLQWKQGLRNESILQSWRTTNRNDNSSSPTPCKWLGIACDAASGSVTEINLSYLNMTGTLQSLNFSS FPNLLRLDLKYNQFTGTIPDTISLLSKLQFLDLSTNYLTGTIPLSLANLTRVTELDLSRNDINGTLDPRLFSGTGLASLQNLLIETTGVGGSIPEEIGNL KNLSILAFGENQFSGSIPSSLRNLTELTILRLYANQLSGPLPPGIENLSKLTDIRLFTNNLSGNVPPGIGNLSSLTVLHLGDNHFTGFLPQEVCKGGKLI NFTADGNNFYGPIPRTLRNCSSLYRARFEYNQLEGNLNRDFGVYPNLTYIDLTGNNLEGEVSPQWAQSQSLTYLALGGNKLTGEIPNEILQLEKLVELDL SANRISGEIPADIGRLSRLMSLTLNGNMLSGQIPVGIGTMSSLQYLDLSMNMLTGSVPSQLGDCSRLQLLSLSTNNLSGSIPFQIGNLVALQDLLDLSYN SFTGGIPSQFSKLTTLENLNLSHNSLAGSIPPSLTNLLSLISLNFSGNQLEGRIPNSQAFQSAPPSAYSNNKDLCGESHTLLRSCDDPVVVVANRPNKRR QTAIIAGASAAGLFLLLLLLGTLASLRRGRKSRFVARKDEVGSDDDDPSPSVCYLKSKITYREIIDSTENFNDRYCIGEGATGKVYKASTSDQRHLLAVK KLNPNPIAGENEEEEIYQELELKTFTREVAALTELRHRNIVRMYGFCSRRSSYSFLVYEYMEKGSLADILRSDKAAAEELDWGKRFEIVRGVADALTHMH HAVSPAVIHRDVSSKNVLLDSDLVAHVSDFGTAKFLKPDSSNWTAFAGTYGYAAPELAYTMVVTEKCDVYSFGVLTLEVVMGKHPGEFITYLQSPAGRQQ GILQPEGIADPRLPLPAVVDEDEEEDIRQKLSIMLRIGFSCVATNPELRPTMRSISQLLETFHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	0	1
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	3.3	0.7279
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	4.5	0.7373
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	4.6	0.7587
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	5.7	0.7599
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	6.3	0.7513
					Lus10025850 [exp]	6.3	0.7417
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10041474 [exp]	9.2	0.6819
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	11.8	0.7215
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	14.9	0.7513
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	16.9	0.7464

Compare expression of checked genes

Lus10031161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.