Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62420 407 / 1e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 275 / 2e-91 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37790 264 / 4e-87 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT3G53880 245 / 1e-79 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 240 / 1e-77 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT1G59960 239 / 4e-77 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G01670 226 / 3e-72 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21250 217 / 8e-69 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 214 / 8e-68 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 214 / 1e-67 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031739 [exp] 611 / 0 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10027216 [exp] 519 / 0 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010720 [exp] 255 / 2e-83 AT1G59960 410 / 2e-144 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029208 [exp] 254 / 4e-83 AT1G59960 406 / 7e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010884 [exp] 252 / 2e-82 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010885 [exp] 251 / 3e-82 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 245 / 1e-79 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10011056 [exp] 240 / 1e-77 AT1G59960 325 / 8e-111 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10030946 [exp] 235 / 2e-75 AT1G59960 317 / 1e-107 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125400 [exp] 476 / 1e-170 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G097000 [exp] 258 / 7e-85 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.006G090600 [exp] 257 / 3e-84 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.008G193100 [exp] 256 / 7e-84 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.016G102300 [exp] 244 / 2e-79 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102032 [exp] 238 / 1e-76 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 218 / 3e-69 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 207 / 5e-65 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.009G125100 [exp] 198 / 2e-61 AT2G21250 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.008G144600 [exp] 189 / 2e-57 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10031162 pacid=23151140 polypeptide=Lus10031162 locus=Lus10031162.g ID=Lus10031162.BGIv1.0 annot-version=v1.0 ATGAGGAGGAGCAACAACATTGTGAGAGAAGTGAGGTTGAATAGTGGGATGAGGATGCCTTTGATGGGGTTGGGCACTTACTCGGGCCAGAACGACTCTT ACTCTACTCAACACGCTATTCATCTTGCCCTTCAGATGGGGTATAGACATTTTGACACCGCAAAGATATACGGGTCGGAACCTGCAGTGGGAGATGCATT GGCGGATGCATTTATTGGAGGGACGGTGGTGGATAGAGAGGACGTATTTGTTACCTCTAAGTTGTGGGGGAGCGACCATCATGATCCTATTTCCGCCCTT CGACGTACTTTGAAGAATTTGAGGATGGAGTATCTAGACTTGTATTTGGTACACTGGCCAGTGAAGCTGAAACATTGGGCCTCCAGCCCAATGCCACAAG AGAACGAGTTTGACGAGTTGGACTTGGAGTCCACTTGGGCCGGCATGGAGAGATGCATCGATTTGGGCCTGTGTCGTAGCATCGGCGTCAGTAACTTCTC CTCTACCAAAATCGAGTCATTGCTCGAATTTGCGTCACTTCCTCCAGCGGTCAACCAGGTCGAAATGCACCCAATGTGGAGGCAAAGTAAACTCCGAGAG GTGTGCGGAGAACACAAGATCCACGTGAGCGCATACTCACCGCTTGGCGGGCCAGGAAACGCATGGGGATCCAAGGCCGTTGTGGAAAGCCCAATAGTCC AGTCCATAGCCCAAAAACACAAGGCCACTCCGGCCCAAGTAGCCCTTCAATGGGGGGTCTCGAAGGGAGCCAGTGTTGTAGTGAAGAGCTTCAACCAGAG GAGGATCAGAGAGAACATGGAGGCATTCCACTTGAAGCTCGAGGAGAGAGACATTGAGGACATCGACAGTTTACGAGAATGGAAGATCATGAGAGGGGAG TTCCTCATTAACGGCACCACTAGCCCATATAGATCGATCGAAGAGCTGTGGGATTACGAGATTTGA
AA sequence Show only first row Show all	>Lus10031162 pacid=23151140 polypeptide=Lus10031162 locus=Lus10031162.g ID=Lus10031162.BGIv1.0 annot-version=v1.0 MRRSNNIVREVRLNSGMRMPLMGLGTYSGQNDSYSTQHAIHLALQMGYRHFDTAKIYGSEPAVGDALADAFIGGTVVDREDVFVTSKLWGSDHHDPISAL RRTLKNLRMEYLDLYLVHWPVKLKHWASSPMPQENEFDELDLESTWAGMERCIDLGLCRSIGVSNFSSTKIESLLEFASLPPAVNQVEMHPMWRQSKLRE VCGEHKIHVSAYSPLGGPGNAWGSKAVVESPIVQSIAQKHKATPAQVALQWGVSKGASVVVKSFNQRRIRENMEAFHLKLEERDIEDIDSLREWKIMRGE FLINGTTSPYRSIEELWDYEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	0	1
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	1.0	0.9397
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	2.4	0.8407
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	3.2	0.8319
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	3.7	0.8656
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	5.7	0.8275
					Lus10005608 [exp]	7.0	0.8284
					Lus10013672 [exp]	7.3	0.8252
					Lus10039737 [exp]	8.5	0.7845
					Lus10008440 [exp]	10.4	0.8170
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10027248 [exp]	10.8	0.8326

Compare expression of checked genes

Lus10031162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.