Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61450 572 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60760 45 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45090 42 / 0.0008 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031740 [exp] 936 / 0 AT5G61450 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021447 [exp] 48 / 1e-05 AT5G60760 422 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016116 [exp] 47 / 1e-05 AT5G60760 424 / 3e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125700 [exp] 624 / 0 AT5G61450 543 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G108000 [exp] 598 / 0 AT5G61450 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G009200 [exp] 43 / 0.0005 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G213500 [exp] 43 / 0.0006 AT5G60760 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031163 pacid=23151108 polypeptide=Lus10031163 locus=Lus10031163.g ID=Lus10031163.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGGAAGGAAGTGATGGTCGGGCCATCTTCAAGCCCTAGCAGTAACAAGCGCTATGGAGACGAGGATGACGATCCGGATCATCAATCTTCCT CTGACTTCAAGTTCTCCGCTCGCAATGCTGCCTCCAAATACGATTTCGTCAAGGTGAAGGTTTGGTTGGGAGATAACGCCGATCATTACTACGTACTTTC CAGATTCTTACTCAGCAGAATGTTAACTGTAACCAAGATACCGAATCATGTAGCAGTTAAGATTGCTCTTGAACTGAAGAAATTGCTTGTTGATAACAGC CTCCTTGATGTTTCTCAGTCAGATTTGGAGGCTAACCTATTCAAGCTCATGGAGAGGCGGGGGTATGGCGAAGAGTACATCAACAGATACAAGATGATGA CAAGATTCCACCATCAAAGGATGCCACTGGTGATTCTTGTTTGTGGAACTGCTTGTGTTGGGAAGTCTACTATAGCTACTCAACTTGCACAAAGGCTGAA TTTGCCCAACGTCTTGCAGACAGAAATGGTTTATGAGCTACTGCGGACATCAACCGATGCGCCTTTGTCATCTACTCCTGTTTGGGCGCGGGATTTCAGC TCCCCCGAGGAATTCATTACTGAATTTTGTAGAGAATGCAGAATAGTCCGTAAAGGTTTGGCTGGTGACTTGAAGAAAGCAATGAAAGATGGAAAGCCAA TCATAATTGAGGGGATACACCTTGACCCTAGTATCTATTTAATGGATGAAGACAATAAGACACCAGCCAGTGTGCCTGAAAGGACTGGAATGATAACTCC ATTCTCGGTTGAAAAATCCACATTAGGACGTGGGCCTTCAAGGGATCCGGAAGACAATGGTCCTAGTGTTAGTGGCACTCAATCTGAGGATCTAGTTGGC TCTCGTGGGAATGAAGCCGCAGAAGAATCAAAATTCGGTGACAAACAGGAGTCCCACTTGGATGATATGAAAACTGCTGAAGGGCCAAAAAGTCGTAATG AGAATAAAGCTACTAAGGGACCAAACGAAGAGAAAAACCTTTACATCAAGAAAGCAAAGTCTGGTGCTGATCCGATAATCATACCAATTGTTCTAAAGAT GGGTGAATTTGACCATAAGGCCTTACTGGAAGAATGGATCTCTGCTCGTATACCTAGCGACAAGTACCAAGTCAAGGATAAAGATCGGCTAATGGCCAAT CTGAAAACGCTTCAGGACTATCTCTGCTCTTTCACGTCGCAGGGCCTAACTGTTGCTAATATATCTGCAACAACCTTCCCTCAAACACTGGATTGGCTCC ATGGCTATCTTCTTCAGTGTATCGAGCAAGGGATTTCATCGGCTTCCAATGAAAACGATATGCAGCCTGCTCGAAATTAA
AA sequence Show only first row Show all	>Lus10031163 pacid=23151108 polypeptide=Lus10031163 locus=Lus10031163.g ID=Lus10031163.BGIv1.0 annot-version=v1.0 MGKGKEVMVGPSSSPSSNKRYGDEDDDPDHQSSSDFKFSARNAASKYDFVKVKVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAVKIALELKKLLVDNS LLDVSQSDLEANLFKLMERRGYGEEYINRYKMMTRFHHQRMPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTEMVYELLRTSTDAPLSSTPVWARDFS SPEEFITEFCRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEDNKTPASVPERTGMITPFSVEKSTLGRGPSRDPEDNGPSVSGTQSEDLVG SRGNEAAEESKFGDKQESHLDDMKTAEGPKSRNENKATKGPNEEKNLYIKKAKSGADPIIIPIVLKMGEFDHKALLEEWISARIPSDKYQVKDKDRLMAN LKTLQDYLCSFTSQGLTVANISATTFPQTLDWLHGYLLQCIEQGISSASNENDMQPARN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	0	1
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	2.4	0.8591
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	3.3	0.8591
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	4.0	0.8427
AT5G08010			unknown protein		Lus10040520 [exp]	6.5	0.8574
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	9.2	0.8424
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10027897 [exp]	9.4	0.7675
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10009912 [exp]	10.4	0.8274
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	10.9	0.8016
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	12.1	0.8325
AT3G14750			unknown protein		Lus10038143 [exp]	13.2	0.8334

Compare expression of checked genes

Lus10031163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.