Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 509 / 5e-179 RNI-like superfamily protein (.1) AT5G51380 469 / 7e-163 RNI-like superfamily protein (.1) AT5G51370 446 / 2e-154 RNI-like superfamily protein (.1.2) AT4G15475 73 / 1e-13 F-box/RNI-like superfamily protein (.1) AT5G23340 62 / 4e-10 RNI-like superfamily protein (.1) AT5G27920 61 / 8e-10 F-box family protein (.1) AT2G25490 58 / 1e-08 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 56 / 3e-08 EBF2 EIN3-binding F box protein 2 (.1) AT5G01720 52 / 9e-07 RNI-like superfamily protein (.1) AT1G21410 49 / 4e-06 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031741 [exp] 837 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10031165 [exp] 619 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031742 [exp] 603 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10027217 [exp] 598 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10038927 [exp] 595 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10027218 [exp] 589 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10012764 [exp] 93 / 8e-20 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002014 [exp] 84 / 6e-17 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 79 / 3e-15 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125800 [exp] 583 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.003G107900 [exp] 582 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 472 / 1e-163 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 464 / 2e-160 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 81 / 7e-16 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 78 / 4e-15 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 72 / 1e-13 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 65 / 6e-11 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 64 / 9e-11 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 63 / 2e-10 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031164 pacid=23150981 polypeptide=Lus10031164 locus=Lus10031164.g ID=Lus10031164.BGIv1.0 annot-version=v1.0 ATGTCTTCGTTGGAAGGGACGAAGAAGAAGGAGAACGGCGAACTGTCTTGCTTAGAAGTAGTAACGCCCATTTCCGTGTCTGAAACCCTAGTTGTGTCCT CCAAGCCCTCTTCTTTCTCCGCCGCCGACATTGTTGACCGTACTTTGCTCTTGAACGACGAAATCCTCCTCAAGATCCTGTCTTTCATCCCGGTGTCCCA TAGGAACTCCAAATGCCGGCTCGTTTGCAAGCGGTGGCGCAATCTCCAAGCTCGCCTGGTTAAGTCTCTCAGGATACTGCACTGGGAGGTACTCGAATCA GGTGGGTTGACTTCTCGGTTTCCTGGTTTGACCAGCGTTGATTTGATCAATGCATGTGTAGTGAACCCAGCTGGTTCAAGTATTTTCTTGACACATCGCC TTATAACTGCGGATTTGGACTGTGGAATATCTGGATTCTTTCCAAGTTGGAAGATTTGTGAGGAGAATTTGTTGTCTGTTGAAACTGTTGATAGAGGTCT CAAAGCTTTGGCCAGTGAGTGTCCTAATTTGAGCAAACTTGCTGTGATCGGAGCTAGTGACCTAGGGCTGTTAAGTGTAGCTGTAGAATGTCAAATGTTG CAAGAACTGGAGCTCCACAAGTGTGATGACGATGTCCTTCCAGGGATTGCTGCTTGTTCCAACTTACAGATACTGAAGCTTGTGGGGAACGTGTATGGAC TATACAGTTCGTTGGTTTCGGACGTTGGGTTGACGATTCTAGCTCAAGGGTGCAAGAGGTTGTTGAAGCTTGAGCTGAGCGGATGTGAAGGGAGCTTCGA TGGGATCAAGGCGATAGGGCAGTGCTGCCAGATGCTTGAAGAGTTGACTGTTTGTGATCATGGGATGGATGATGGGTGGCTGGCTGCTCTTCCTTTCTGT GAGAATTTGAAGACTTTGAGGTTGGTTTCGTGTAAGAGGATAGATTGTGAGCCAGGACCGGATGAGTATCTGGGTTGCTGTTCTGCCCTTGAAAGATTAC ATTTGGAGAGGTGTCAGTTGAGGGATAAGAATGGTGCTAGAGCTTTGTTTAAGGTTTGTGAAACGGTGAGGGAAGTTGTTGTTCATGATTGCTGGGGATT GGACGACGAAGTCTTCAGCTTTGCAAGCATTTGCAGGAGAGTAAACTTGCTCTATTTAGAAGGTTGCTCCTTGCTGACAACTGAAGGGCTCGAGTTGGTG ATCCTAACCTGGAACGAGCTCCAGCATCTCCAAATTGAGTCGTGTAAGAACATTAAAGATGGCGATATCTCTCCATCCCTTTCGAACTTATTCACCAGCC TGAAAGAGCTGAGATGGAGGCCGGACTCCAAGTCAATCCTTGCCGCTGGTCTTGTGGGAACCGGCATAGGGGAGAAAGGCAGCAAGTTCTTCAGGAAATC GTGA
AA sequence Show only first row Show all	>Lus10031164 pacid=23150981 polypeptide=Lus10031164 locus=Lus10031164.g ID=Lus10031164.BGIv1.0 annot-version=v1.0 MSSLEGTKKKENGELSCLEVVTPISVSETLVVSSKPSSFSAADIVDRTLLLNDEILLKILSFIPVSHRNSKCRLVCKRWRNLQARLVKSLRILHWEVLES GGLTSRFPGLTSVDLINACVVNPAGSSIFLTHRLITADLDCGISGFFPSWKICEENLLSVETVDRGLKALASECPNLSKLAVIGASDLGLLSVAVECQML QELELHKCDDDVLPGIAACSNLQILKLVGNVYGLYSSLVSDVGLTILAQGCKRLLKLELSGCEGSFDGIKAIGQCCQMLEELTVCDHGMDDGWLAALPFC ENLKTLRLVSCKRIDCEPGPDEYLGCCSALERLHLERCQLRDKNGARALFKVCETVREVVVHDCWGLDDEVFSFASICRRVNLLYLEGCSLLTTEGLELV ILTWNELQHLQIESCKNIKDGDISPSLSNLFTSLKELRWRPDSKSILAAGLVGTGIGEKGSKFFRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07670			RNI-like superfamily protein (...		Lus10031164 [exp]	0	1
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10002681 [exp]	8.1	0.7728
AT3G04310			unknown protein		Lus10003583 [exp]	10.9	0.7884
AT4G04614			unknown protein		Lus10014685 [exp]	14.7	0.7618
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	19.1	0.7754
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	22.8	0.7516
AT5G07670			RNI-like superfamily protein (...		Lus10031741 [exp]	25.2	0.6923
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	26.0	0.7866
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10005058 [exp]	29.4	0.6785
AT4G16580			Protein phosphatase 2C family ...		Lus10023916 [exp]	44.7	0.7073
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	46.1	0.7324

Compare expression of checked genes

Lus10031164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.