Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 503 / 1e-175 RNI-like superfamily protein (.1) AT5G51380 469 / 1e-162 RNI-like superfamily protein (.1) AT5G51370 429 / 3e-147 RNI-like superfamily protein (.1.2) AT4G15475 90 / 9e-19 F-box/RNI-like superfamily protein (.1) AT5G23340 76 / 1e-14 RNI-like superfamily protein (.1) AT2G25490 73 / 1e-13 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 70 / 2e-12 EBF2 EIN3-binding F box protein 2 (.1) AT1G77000 56 / 3e-08 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G27920 56 / 4e-08 F-box family protein (.1) AT1G21410 54 / 2e-07 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031742 [exp] 842 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10038927 [exp] 637 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10027218 [exp] 634 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10031741 [exp] 623 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10031164 [exp] 620 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10027217 [exp] 594 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10012764 [exp] 92 / 3e-19 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 81 / 2e-16 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 81 / 4e-16 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125800 [exp] 613 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.003G107900 [exp] 613 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 478 / 1e-165 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 463 / 1e-159 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 83 / 8e-17 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 75 / 4e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 74 / 7e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 71 / 8e-13 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 70 / 2e-12 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G238300 [exp] 67 / 6e-12 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031165 pacid=23150982 polypeptide=Lus10031165 locus=Lus10031165.g ID=Lus10031165.BGIv1.0 annot-version=v1.0 ATGGGCTTTTTACAGGAGGAGAAACCGATTACTCCGACGACGGCGACGACGACGAAGAAGAAGAACATGAGATCATCGAACTGGTCCGATCTCTGGCTGA AGAGTTCTGTCTCCAAGTCTCTGAAGCACGTCGTCTTCGCTCTGCAAGTCCCGACTCTGTCCAAAACTCCGGCGACTGCTCCGGCGTTCCCGAAGGACAA ACTCCAAACCGTAATCTTCAATGTCTCCGACATTGTCGACCGTACCTTGTTCCTGAACGATGACATCCTGCTAAAGATCCTGTCTTTGTTACCCGATTCA CAGAGGAAATCCAATTGCCTTGTTTCCAAGCGCTGGCTCAATCTCCAAGGGAGGCTTGTCCGGTCGATTAAGATATTGGATTGGGAGTTTCTCGAATCAG GTCGGTTGATTTCTAGGTTTCCTAATTTGAGTCATGTGGATTTGATCAATGGGTGTGTTGTTAATGTCAGCCCTTTGGATTCGAGAATTTGCTTGGGCAA TCGGGTTGTCTCGGCGCATTTGGACTCTAGGGTTTCTGAATTGTTGCCGAGTGGGGGAGTCTGTGAGGAGAAATTGTTGCCCGTTGAGATTGTGGATAGA GGGCTTACAGCTTTAGCCAACGGCTGTCCTAATCTACGCAGGCTGGCAGTGATCGGTGCCAGTGAACTCGGGCTGTTATCTGTCGCTGAAGAATGTCCAA CGTTGCAGGAACTGGAGCTGCACCGATGTAACGACAGCGTGCTTCGAGGGATTGCAGCTTGTTCGAATTTGCAGATATTGAGACTTGTGGGGAATGTGTA TGGCCTTTACAGTTCGTTGGTTTCTGATGTTGGTTTGACGATTCTGGCTCAGGGTTGTAAGAGGCTGGTGAAGCTTGAGCTCAATGGATGCGAGGGTAGC TTCGATGGGATTAAGGCGATCGGGCAGTGCTGCCAGATGCTTGAAGAGTTGACTGTGTGTGATCATAGGATGGATAATGGGTGGCTGGCTGCTCTTCCCT TCTGTGAAAATTTGAAGACTTTGAGGCTTCTTTGGTGTAGGAAGATAGATCCTGTACCGGGGCCGGATGAGTATCTGGATTGTTGTTCTGCCCTTGAGAG ACTGCATTTGGAGAGATGTCAGTTGAGGGACAAAGAAAGCGTCCGAGCTTTGTTTAAGGTGTGTGGAAAAGCGAGGGACATTGTTGTCCAGGATTGCTGG GGATTGGACAACGCCATGATCAGCTTCGCAAGCATTTGCAGGAGAGTAAAGCTACTCTATCTGGAAGGATGCTCATTGCTGACGACAGAAGGCCTTGAGT CCGTGCTTCTAACCTGGAACGAGCTCGAGAATCTCAAGATAGAGTCCTGCAAGAACATCAACGACGGCGAGATATCTCCAGCGCTTTCGATCCTATTCTC TACTCTTAAAGAGCTTAGGTGGAGGCCAGATTCCTCCAAATCGCTCCTCGCAGCAGGTCTTCCAGGGACTGGCTTCGGGAAGAAAGGCCGCAGATTCTTC AGGAAGTCATGA
AA sequence Show only first row Show all	>Lus10031165 pacid=23150982 polypeptide=Lus10031165 locus=Lus10031165.g ID=Lus10031165.BGIv1.0 annot-version=v1.0 MGFLQEEKPITPTTATTTKKKNMRSSNWSDLWLKSSVSKSLKHVVFALQVPTLSKTPATAPAFPKDKLQTVIFNVSDIVDRTLFLNDDILLKILSLLPDS QRKSNCLVSKRWLNLQGRLVRSIKILDWEFLESGRLISRFPNLSHVDLINGCVVNVSPLDSRICLGNRVVSAHLDSRVSELLPSGGVCEEKLLPVEIVDR GLTALANGCPNLRRLAVIGASELGLLSVAEECPTLQELELHRCNDSVLRGIAACSNLQILRLVGNVYGLYSSLVSDVGLTILAQGCKRLVKLELNGCEGS FDGIKAIGQCCQMLEELTVCDHRMDNGWLAALPFCENLKTLRLLWCRKIDPVPGPDEYLDCCSALERLHLERCQLRDKESVRALFKVCGKARDIVVQDCW GLDNAMISFASICRRVKLLYLEGCSLLTTEGLESVLLTWNELENLKIESCKNINDGEISPALSILFSTLKELRWRPDSSKSLLAAGLPGTGFGKKGRRFF RKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07670			RNI-like superfamily protein (...		Lus10031165 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Lus10031741 [exp]	3.7	0.6890
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10002522 [exp]	14.2	0.7037
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	20.6	0.6675
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	30.5	0.5693
AT2G23770			protein kinase family protein ...		Lus10041323 [exp]	40.3	0.5807
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	42.8	0.6431
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	58.3	0.6048
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10041492 [exp]	64.3	0.5849
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10035577 [exp]	68.3	0.5334
AT3G22970			Protein of unknown function (D...		Lus10006634 [exp]	69.1	0.6083

Compare expression of checked genes

Lus10031165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.