Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 61 / 1e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26610 47 / 4e-06 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G56200 45 / 2e-05 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT5G61470 44 / 3e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 44 / 6e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 43 / 9e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 42 / 0.0002 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G35280 42 / 0.0003 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT3G23130 40 / 0.001 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027220 [exp] 59 / 4e-10 AT1G02030 99 / 1e-24 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 57 / 3e-09 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 53 / 9e-08 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 51 / 4e-07 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 51 / 4e-07 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10004659 [exp] 50 / 5e-07 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 49 / 6e-07 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 50 / 9e-07 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10037095 [exp] 49 / 1e-06 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125900 [exp] 55 / 1e-08 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 51 / 3e-07 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.004G118100 [exp] 50 / 9e-07 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G159600 [exp] 49 / 1e-06 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 49 / 1e-06 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 48 / 3e-06 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 47 / 7e-06 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 47 / 8e-06 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.002G143800 [exp] 45 / 2e-05 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.011G168900 [exp] 43 / 0.0001 AT2G28200 64 / 2e-11 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031166 pacid=23151079 polypeptide=Lus10031166 locus=Lus10031166.g ID=Lus10031166.BGIv1.0 annot-version=v1.0 ATGACGAGACTCATCAAACATCTCGATTCGAAACCTAACTCTAAACCATCACCCAAAAACTCAAAGCTGGCCATGCAATCTCCACAAGCACCACGGTTGA CTACTTACCATGGTCCCACTGCCGCCATCACCAAGCCGAGAACCAAAAGATGGGGCCGAATATCAACTATCTTGACAAAAGCTCCAACCACTTCGCCCTT ATTAAGCGAGGTAGAGGTTGCTGCTCAAAGCCTGATGACCATGTATCACCATGATCTTAGTGATGAAGTCGTCGAAGTGAAAGAGGCTGACGAAAAGTAC TACAAGTGTGACAAATGTCCAAAGAAGTTCGCAACTTATCAAGCATTGGGTGGCCATCATGCTAACCACAACAAAAATGATGTTGCTTCCTCCAAACTTG TAACCCTCATCGATGACGACGATGAGGATTACAAGGGAAAAGCAGAAGAGAAAGATGATGATGATGATGAGGTGGTCATTTTAGGCAGCACCATCAACAA AAATGTCGTCACTGGTCGTGGTGGCAGTGGAAGCGGTGGGGCCTGCAATACTAGGAAGACTAAAAAGAAAAGGAAGAGGGAATTCAAGTGTCCTTTTTGT ATTAGAGTGTTTAGGTCGGGTCAGGCGCTCGGTGGTCATAAGAAGGTTCATTTCTCCGATCATAAGCTTTCCAATAGTACTACTCCTGCTGCCATGGCGA CTGAACCAACCACTGTTGTCAGGAATTCCGAGATCGATCTTAATTTTTCGACTTCTGTCGATGAATGA
AA sequence Show only first row Show all	>Lus10031166 pacid=23151079 polypeptide=Lus10031166 locus=Lus10031166.g ID=Lus10031166.BGIv1.0 annot-version=v1.0 MTRLIKHLDSKPNSKPSPKNSKLAMQSPQAPRLTTYHGPTAAITKPRTKRWGRISTILTKAPTTSPLLSEVEVAAQSLMTMYHHDLSDEVVEVKEADEKY YKCDKCPKKFATYQALGGHHANHNKNDVASSKLVTLIDDDDEDYKGKAEEKDDDDDEVVILGSTINKNVVTGRGGSGSGGACNTRKTKKKRKREFKCPFC IRVFRSGQALGGHKKVHFSDHKLSNSTTPAAMATEPTTVVRNSEIDLNFSTSVDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031166 [exp]	0	1
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	3.6	0.9060
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	6.2	0.9009
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	7.5	0.9009
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10017059 [exp]	7.6	0.7519
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	8.9	0.8889
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	9.7	0.8849
					Lus10011637 [exp]	10.7	0.8797
					Lus10042238 [exp]	11.0	0.8590
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	11.5	0.8789
					Lus10016957 [exp]	11.9	0.6812

Compare expression of checked genes

Lus10031166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.