Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79550 622 / 0 PGK phosphoglycerate kinase (.1.2) AT3G12780 603 / 0 PGK1 phosphoglycerate kinase 1 (.1) AT1G56190 598 / 0 Phosphoglycerate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031743 [exp] 688 / 0 AT1G79550 715 / 0.0 phosphoglycerate kinase (.1.2) Lus10031744 [exp] 600 / 0 AT3G12780 757 / 0.0 phosphoglycerate kinase 1 (.1) Lus10031168 [exp] 599 / 0 AT3G12780 758 / 0.0 phosphoglycerate kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171600 [exp] 636 / 0 AT1G79550 718 / 0.0 phosphoglycerate kinase (.1.2) Potri.008G084400 [exp] 635 / 0 AT1G79550 717 / 0.0 phosphoglycerate kinase (.1.2) Potri.010G171500 [exp] 604 / 0 AT1G56190 769 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.008G084500 [exp] 603 / 0 AT1G56190 768 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.016G091800 [exp] 152 / 5e-41 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00162 [flax] [poplar] PGK Phosphoglycerate kinase
Representative CDS sequence Show only first row Show all	>Lus10031167 pacid=23151133 polypeptide=Lus10031167 locus=Lus10031167.g ID=Lus10031167.BGIv1.0 annot-version=v1.0 ATGGATCATGGCGCCCGCGTCATTCTCTCTTCTCACTTGGGTCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTGGTGCCAAGACTATCGG AACTTCTGGGTGTTGAGGTTAAGATGGCCAATGACTGTATTGGTGAGGAGGTTGAGAAATTGGTGGCTGAGACCCAAAATGGAAGTGTACTGCTTCTTGA GAATGTAAGATTCTACAAGGAGGAGGAGAAGAATGATCCCGAATTCGCCAAGAAGCTGGCTTCACTAGCTGATGTCTATGTTAACGATGCTTTCGGTACT GCCCACAGGGCCCATGCTTCTACTGAAGGCGTTGCCAAGTTTGTGAAACCCGCCGTTGCTGGTTTCCTCATGCAGAAGGAACTTGATTATCTTGTTGGAG CTGTTTCAAACCCCAAGAAGCCATTCGCCGCCATCGTTGGTGGGTCGAAGGTGTCATCCAAGATCGGAGTGATCGAGTCTCTATTGGAGAAGGTTGATGT GCTCTTGCTTGGTGGAGGAATGATCTTTACATTCTACAAGGCACAGGGGAAGACAGTTGGGTCATCCCTGGTGGAGGAAGACAAAATCGAACTCGCAACT TCACTCTTTGAGAAGGCAAAGGCTAAGGGAGTGTCTCTGCTCTTGCCTACTGATGTCGTCATTGCCGACAAGTTCGCTGCTGATGCCAACAGCAAGGTGG TGCCAGCATCCGAGATCCCCGATGGATGGATGGGTTTGGACATCGGACCGGATTCCATCAAGACGTTCAGCGAATCATTGGACACCACAAAGACTGTCAT CTGGAATGGACCTATGGGAGTGTTTGAGATGGAGAAGTTTGCAGTTGGAACCGAGGCAATTGCGAAGAAGCTGGCGGAGCTGAGCGGCAAGGGAGTGACC ACAATCATCGGAGGAGGCGACTCGGTGGCCGCAGTGGAGAAAGTGGGTCTGGCTGACAAGATGAGCCACATTTCGACTGGAGGAGGTGCCAGTTTGGAGC TTCTGGAGGGGAAGCCACTCCCTGGAGTCCTTGCTCTGGATGAAGCTTGA
AA sequence Show only first row Show all	>Lus10031167 pacid=23151133 polypeptide=Lus10031167 locus=Lus10031167.g ID=Lus10031167.BGIv1.0 annot-version=v1.0 MDHGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKLVAETQNGSVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGT AHRAHASTEGVAKFVKPAVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGKTVGSSLVEEDKIELAT SLFEKAKAKGVSLLLPTDVVIADKFAADANSKVVPASEIPDGWMGLDIGPDSIKTFSESLDTTKTVIWNGPMGVFEMEKFAVGTEAIAKKLAELSGKGVT TIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	0	1
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	2.2	0.9186
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	2.8	0.9395
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	3.2	0.9366
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	3.5	0.9229
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	3.5	0.9255
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10040958 [exp]	6.9	0.8877
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	7.7	0.8969
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	7.9	0.9068
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	9.5	0.8207
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	9.8	0.9087

Compare expression of checked genes

Lus10031167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.