Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79570 683 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 672 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT2G35050 594 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 463 / 3e-145 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 456 / 7e-142 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 432 / 2e-132 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 428 / 3e-132 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 188 / 2e-49 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 181 / 8e-49 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G73660 186 / 8e-48 protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031749 [exp] 1370 / 0 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031750 [exp] 619 / 0 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 457 / 4e-152 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 432 / 1e-138 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 433 / 7e-134 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 432 / 2e-131 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 434 / 4e-131 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 373 / 5e-111 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031341 [exp] 187 / 2e-48 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095200 [exp] 702 / 0 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 668 / 0 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.001G123500 [exp] 619 / 0 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 605 / 0 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 464 / 5e-145 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 456 / 4e-142 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 437 / 4e-135 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 437 / 2e-132 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 427 / 4e-131 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 422 / 9e-127 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10031173 pacid=23151077 polypeptide=Lus10031173 locus=Lus10031173.g ID=Lus10031173.BGIv1.0 annot-version=v1.0 ATGGAGCAGTCAGGTATCCATCATCAATATGATTCTAGAGAACATGTGCCGGAAGGTTTCCACCATCCTGCATCTCAAGCATTTGCAGTGGATCCTGCGA TGGGTGGTGGAAATCCGCACTTGATACTACTACCTGATCCCAATGCATCTGGAGTTAAACCAGTACGCAATTTCTCAATACAGACAGGGGAAGAATTCGC TCTCGAATTCATGCGTGATCGAGGTAATCCTAAGCCGCCTCTGTTGCAAAACTGTGGTGTTGTTGAACCAAACTACGCCATGGGGTATATGGAACTGAAA GGAATGCTAGGTATCAGCCATACTGGATCGGAAACTGGATCAGATTTATCGATGGTCACCGCTGTGGATAAAAGCGCAAAAGATTTCGGAAGAACAAACT CTAACTTACATGAAGACAGAAGCATCTATGGGTCTGTTCAGTCAATTCCACGTAATTCTTCAGCCTATGGGAGTAGGGGAACTTTGAATGGTGGTTATAC ATCATCTAGCACTTCCAGTTCATTGACCAAGATGAAAGTTCTTTGCAGCTTCGGTGGTAAAATCCTACCCCGGCCTAGCGATGGAAAGCTTAGGTATGTT GGGGGCGAAACTCGCATTATACGCGTAAGTAGGGATATTTCCTTTCAGGAGCTCAGGCAGAAAACTTTAGCCATTTATAGTGAGGCTCATGTTATAAAAT ATCAACTTCCTGGAGAAGATCTTGATGCATTGGTTTCTGTTTCTTGCGATGAGGATCTGATGAATATGATGGAGGAATGGAATGAGGTCGAAGATAAAGA CGGATCTCAAAAGCTAAGGGTGTTCTTGTTCTCCTTGAGTGATTTGGATGATAACAATCAGTTTGGTCTAGGAAGCACGGAAGGCGATTCTGAAATTCAA TTTGTGGTTGCTGTAAATTGCATGGATATTGGATCTAGAAAAGGCTCAGCACTACAGGGTTTGGGGAGCTCTTCAGGAAACAATTTAGATGAGCTGGATA GGTTAACCAGTGATGTGGAGGCTTCCAATAGAGCTGCTGTGCCTATCCCCGATGAAGCTGGTGCCTCATCTTTGACTGGCGCTTTCTTATCTTCTGCACC GATCCATCCAAGTTCGTCCAGTGCCTATGAAGCAGTTTATTCTGGTCGCATGGTGAATCATGGAGAAAGGCAGATGCCTATGCACTATCGCGATAATTCA TCTAATTACTCTCAGTTTGGAGAAACTCCTTATCCGGTGCCGGTACAAGGAGGGATAAATGAAGGATGGCGGTACGGTACCTTGCAAGTGCCAAACACAC ACGCCTTGGGAAATGAGGCGAATCCGAATACTGATGGTTATACTCAGCAAGATGCTAACTTGGTTAAATCTACTATGCCACAGAGAACATTGCCGGTTAC TGCTGACGAGACGCAATCATCAGTTGTTGTTCCGGAGAAGGATTTGCATTCTATGCCTTCCAGAGATGAGGAAGTGAGGCGGGAACCTGGAAAGTTGGTT TCTTTGGCTGGTGGTGCTACAACAAATGTAGTTCAGGTTCCGAAATCTTACGATGATGGTCAAGGTCCGACTTCAAATAGTGCTGTTTCCGATCCGGTGG ACTTGAGTTATCTCGAGTCATCTATTCCTCCACAGAGAGTTTACTATTCGGAGAGGCTACCGAGGGAGACAGCAGGGCTGTTACATAGAATATCTAAATC TGATGACTCCCTTGGTCCGCAGATTCTCGGTTCTCATTCGCGGTCTGATATTCCTGAGCATGATTCAATTGCTGAATCAGTAGAAAAGTTGGGCCAAAGT AATAATCTGAGTCTAGATGAGAAAACACTCAAGGGAGAACCTCCTCAATCAATCGATTTAGCAAATAAGGAAACGCCAGACAGCTCAGCTAAAGAGGTCG CAGAATCTGTTACAGACACCAAACAAGCAGATATTGTAGTGAATATCGACGACAGATTCCCTCAGGATTTCCTCTCTGAGTTGTTTGCCAATACTACCCC CGGCGTTGCTCATACAAACAATGATGGAGCTGGAGTAAGCGTGAACATGGAAAATTATGAACCTAGGAGGTGGTCTTATTTTCAGAAGTTGGCACAGGAA GAGTTCATTGTTAAGGATGTGTCCCTTATTGACCAGGACCATCTTCCTATGGTAGCTCCTCCACCAACAAAAGTTCAAGCGGACCTCAAATCTCATCACT TTTCACCTTTGACCACTACTGTAGTTTCAACGGGCCAGAGTGCTTTACCCCGAATCACTGAAACTTCGGATGATGTGTCGGAGTACAATCATCCACGGAC GAAGGAAATCGACAGCTTGCAGTTTGAGGCCATGATTGAGAACCTGAAATCGCCCGAATCTCAATACGAGGACGGGAAGTTGGAGAAGAAGGATACTGGT CTTCCTCCTATTCCTTCTTCGGAGGAAATTGATTTTAGTTCTTTGCAGATTATAAAGAATGAAGATCTTGAAGAACTCAAGGAACTTGGTGCTGGTACTT TTGGCACTGTCTACCATGGAAAATGGAGAGGAAGTGATATTGCCATTAAGAGACTAAAGAAAATATGTTTCACGGGAAGATCATCAGAACAACAAAAGCT GACTCTAGAGTTCTGGCACGAAGCTGAAATCCTTTCGAAACTTCATCACCCAAACGTGGTGGCCTTCTATGGTGTAGTTCAAGATGGACCTGGAGGGACA TTAGCTACTGTAGCAGAGTACATGGTTGATGGTTCTCTTAGGCATGTTTTGCTTCTTAAAGACAGGTATTTGGATCGCCGCAAGAGGCTTCTAATTGCTA TGGATGCTGCATTCGGGATGGAATATCTACACTCGAAGAACATTGTCCATTTTGATTTGAAATGTGACAATTTGCTCGTCAACTTGAAAGATCCTCAACG ACCGATATGCAAAGTTGCTGACTTTGGTCTCTCGAAAATAAAGAGAAATACCTTGGTTTCCGGAGGTGTACGAGGGACATTACCATGGATGGCCCCGGAA CTCCTAAATGGCGGCAGTAATAAGGTCTCCGAAAAGGTCGATGTATTCTCGTTCGGGATCGTATTATGGGAGATTCTTACCGGAGAAGAGCCCTACGCTA ACATGCACTACGGCGCAATCATAGGAGGAATTGTGAACAACACGCTAAGGCCGACGATCCCAAGCTTCTGCGATCCGGAATGGAGAAGGTTAATGGAGAA GTGTTGGGCGCCTAACCCCGAAGCAAGGCCTTCCTTCACTGAGATTGCTAGCCAACTGAGAACAATGTCAGCAGCAGCTGTTAGCCAACCAAAAGGGCAT GGAGGTCATAAACCACCAAAGTAA
AA sequence Show only first row Show all	>Lus10031173 pacid=23151077 polypeptide=Lus10031173 locus=Lus10031173.g ID=Lus10031173.BGIv1.0 annot-version=v1.0 MEQSGIHHQYDSREHVPEGFHHPASQAFAVDPAMGGGNPHLILLPDPNASGVKPVRNFSIQTGEEFALEFMRDRGNPKPPLLQNCGVVEPNYAMGYMELK GMLGISHTGSETGSDLSMVTAVDKSAKDFGRTNSNLHEDRSIYGSVQSIPRNSSAYGSRGTLNGGYTSSSTSSSLTKMKVLCSFGGKILPRPSDGKLRYV GGETRIIRVSRDISFQELRQKTLAIYSEAHVIKYQLPGEDLDALVSVSCDEDLMNMMEEWNEVEDKDGSQKLRVFLFSLSDLDDNNQFGLGSTEGDSEIQ FVVAVNCMDIGSRKGSALQGLGSSSGNNLDELDRLTSDVEASNRAAVPIPDEAGASSLTGAFLSSAPIHPSSSSAYEAVYSGRMVNHGERQMPMHYRDNS SNYSQFGETPYPVPVQGGINEGWRYGTLQVPNTHALGNEANPNTDGYTQQDANLVKSTMPQRTLPVTADETQSSVVVPEKDLHSMPSRDEEVRREPGKLV SLAGGATTNVVQVPKSYDDGQGPTSNSAVSDPVDLSYLESSIPPQRVYYSERLPRETAGLLHRISKSDDSLGPQILGSHSRSDIPEHDSIAESVEKLGQS NNLSLDEKTLKGEPPQSIDLANKETPDSSAKEVAESVTDTKQADIVVNIDDRFPQDFLSELFANTTPGVAHTNNDGAGVSVNMENYEPRRWSYFQKLAQE EFIVKDVSLIDQDHLPMVAPPPTKVQADLKSHHFSPLTTTVVSTGQSALPRITETSDDVSEYNHPRTKEIDSLQFEAMIENLKSPESQYEDGKLEKKDTG LPPIPSSEEIDFSSLQIIKNEDLEELKELGAGTFGTVYHGKWRGSDIAIKRLKKICFTGRSSEQQKLTLEFWHEAEILSKLHHPNVVAFYGVVQDGPGGT LATVAEYMVDGSLRHVLLLKDRYLDRRKRLLIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPQRPICKVADFGLSKIKRNTLVSGGVRGTLPWMAPE LLNGGSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSFCDPEWRRLMEKCWAPNPEARPSFTEIASQLRTMSAAAVSQPKGH GGHKPPK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79570			Protein kinase superfamily pro...		Lus10031173 [exp]	0	1
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	1.0	0.9508
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	4.6	0.9433
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	5.5	0.9448
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	7.3	0.9292
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	7.7	0.9303
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	9.6	0.9305
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	11.0	0.9255
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	11.7	0.9131
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	13.2	0.9269
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	13.7	0.9253

Compare expression of checked genes

Lus10031173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.