Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16445 293 / 1e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031751 [exp] 250 / 2e-84 AT1G16445 86 / 7e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069400 [exp] 334 / 6e-116 AT1G16445 311 / 5e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06962 [flax] [poplar] rRNA_methylase Putative rRNA methylase
Representative CDS sequence Show only first row Show all	>Lus10031174 pacid=23150951 polypeptide=Lus10031174 locus=Lus10031174.g ID=Lus10031174.BGIv1.0 annot-version=v1.0 ATGGCAGGATTGAAGCTCAGCTACTGCTTCTCTCCTCATCGCCATTGTTTCACTTCACTATACAAAATCCTAACAACTACTATTCCATTCCGCGATTCTT CCCGCCTTCACTACTCATCCGGCAAATATTCTCATTTTTGCCGCACAATACCAGCTGCCATTTCTGTGAAAAAGAAACGAACTTTCTCCTCTTCCGCCGC CTACGATTCTCCTCTTTCAGGATTGGATGACATTTTGGTTGGTTACCTCTTGGGGAAGAAGAAGGCAACAGAAGTAGCTCATTTGGTGTGGAAGGGTGTA GTTCAGCAAGGGGATACTGTGATTGATGCCACTTGTGGCAATGGTCATGACACCTTAGCTATGGTCAAAATGGTTGCTGACGAATCGGGCAGAGGCCGTG TCTATGGACTGGACATTCAGAAAGATGCTTTGGAGAGTAGTTCGTCTTTGCTTGACGAATGTCTCACTCCCAAGGAGAGGGAACTCGCCAAGCTATCTGG TATCTGCCACAGTAGAATGGAAGAAATTGTCCCAGAAAATAGTCCAGTTAGGCTAATTGCATTCAACCTTGGTTATCTTCCGGGAGGCGACAAAGATATC ATTACAGTTCCTGAAACAACCAGGCTAGCCTTAGATGCAGCTAAGAGGATACTGATACCGGGCGGACTCATCAGCTTAGTTGTGTACATAGGGCATCCTG GTGGGAGGCAAGAATTGGAAGCTGTGGAAGATTTTGCATCAGGATTATCTGTTAATGATTGGAGTTGCTGCAAATTCCAGATGCTAAACCGGCCTCTAGC ACCTCTACTGGTTTTCTTGTTCAAGAGATGA
AA sequence Show only first row Show all	>Lus10031174 pacid=23150951 polypeptide=Lus10031174 locus=Lus10031174.g ID=Lus10031174.BGIv1.0 annot-version=v1.0 MAGLKLSYCFSPHRHCFTSLYKILTTTIPFRDSSRLHYSSGKYSHFCRTIPAAISVKKKRTFSSSAAYDSPLSGLDDILVGYLLGKKKATEVAHLVWKGV VQQGDTVIDATCGNGHDTLAMVKMVADESGRGRVYGLDIQKDALESSSSLLDECLTPKERELAKLSGICHSRMEEIVPENSPVRLIAFNLGYLPGGDKDI ITVPETTRLALDAAKRILIPGGLISLVVYIGHPGGRQELEAVEDFASGLSVNDWSCCKFQMLNRPLAPLLVFLFKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16445			S-adenosyl-L-methionine-depend...		Lus10031174 [exp]	0	1
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10009828 [exp]	5.4	0.8651
AT5G16810			Protein kinase superfamily pro...		Lus10016488 [exp]	23.3	0.8299
AT2G35450			catalytics;hydrolases (.1)		Lus10037047 [exp]	24.7	0.8131
AT2G33180			unknown protein		Lus10011764 [exp]	26.6	0.7988
AT3G63510			FMN-linked oxidoreductases sup...		Lus10039605 [exp]	30.6	0.8044
AT2G30170			Protein phosphatase 2C family ...		Lus10031355 [exp]	34.5	0.8084
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10042051 [exp]	51.4	0.8071
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	53.9	0.7182
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	57.5	0.8043
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	59.7	0.7292

Compare expression of checked genes

Lus10031174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.