Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 271 / 1e-88 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72160 219 / 7e-69 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 220 / 7e-68 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G51670 190 / 2e-58 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 173 / 6e-50 PATL2 PATELLIN 2 (.1) AT1G72150 166 / 4e-48 PATL1 PATELLIN 1 (.1) AT1G22180 48 / 1e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 46 / 6e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36640 44 / 4e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75170 44 / 6e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031752 [exp] 473 / 4e-166 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038435 [exp] 277 / 8e-91 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10009453 [exp] 218 / 1e-70 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001542 [exp] 219 / 2e-68 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 210 / 3e-67 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10003552 [exp] 206 / 7e-64 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10012219 [exp] 185 / 2e-57 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001269 [exp] 186 / 8e-57 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10009458 [exp] 148 / 3e-42 AT4G09160 275 / 2e-87 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461400 [exp] 282 / 5e-93 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G224800 [exp] 223 / 9e-71 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.019G079500 [exp] 223 / 3e-69 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 221 / 7e-69 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 221 / 2e-68 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 221 / 2e-68 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 219 / 9e-68 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 219 / 1e-67 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 218 / 1e-67 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.016G127700 [exp] 188 / 1e-57 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10031175 pacid=23150968 polypeptide=Lus10031175 locus=Lus10031175.g ID=Lus10031175.BGIv1.0 annot-version=v1.0 ATGGAGAAATGTGTGATTGAACAGCTGGATTTCAATCCTGGTGGGACTTGCGAGATTCTTCAGATCAATGATCTCAAGAACACTCCTTTGCCTACTAAGA AAGAAGTCCGGCTTGCCACCAGGAGAGTTGTTGAGGTTCTTCAGGACAACTACCCTGAATTTGTCTATACCAACATATTTATCAATGTACCATTGTGGTA CTACGCGTTCAATACAGTTCTGTCCCCTTTCCTAACCCCAAGGACTAAGAACAAGTTCATTACAGCCAGGCCATCCAACGTTACAGAAATTCTACTGAAA TATATTGCTGCGGAGCAACTTCCAGTAAGGTATGGAGGCCTGAAGATGGACAATGATCCAGATTTCTGTCCCGATGATGTCGCGAAAGAGGTGTGGGTGA AGTCAGCATCCACCGAAATCATAGAGATTCCTGTGCCAGAGGGAGGCAAAACAATGTTGTGGGACCTCACAGTGTCGAGCTGGGAAGTGAGCTACAAGGA AGAATTCGTACCGACAAATGAAAAGTCGTACACAATAATAGTTCAGAAGACAAAGAAGATAAATTGGCAGGAAGGAACAATCCGGAATTCATTCGGGAAT CCAGAGCCGGGGAAGATTCTAGTCACAATTGACAATGCTTCCTTCAGGAAGAAACGCATTCTTTACAGATACAAGGCCAAGAATGCCTCATCTTCATGA
AA sequence Show only first row Show all	>Lus10031175 pacid=23150968 polypeptide=Lus10031175 locus=Lus10031175.g ID=Lus10031175.BGIv1.0 annot-version=v1.0 MEKCVIEQLDFNPGGTCEILQINDLKNTPLPTKKEVRLATRRVVEVLQDNYPEFVYTNIFINVPLWYYAFNTVLSPFLTPRTKNKFITARPSNVTEILLK YIAAEQLPVRYGGLKMDNDPDFCPDDVAKEVWVKSASTEIIEIPVPEGGKTMLWDLTVSSWEVSYKEEFVPTNEKSYTIIVQKTKKINWQEGTIRNSFGN PEPGKILVTIDNASFRKKRILYRYKAKNASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	0	1
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	1.0	0.9422
AT5G07740			actin binding (.1)		Lus10015725 [exp]	1.4	0.9040
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10032672 [exp]	4.2	0.8576
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	4.6	0.8917
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	5.5	0.8700
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	5.5	0.8569
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	6.0	0.8800
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	6.2	0.8454
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	7.5	0.8578
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	8.0	0.8341

Compare expression of checked genes

Lus10031175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.