Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 140 / 1e-36 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72160 116 / 4e-28 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G22530 94 / 2e-20 PATL2 PATELLIN 2 (.1) AT4G09160 94 / 2e-20 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G72150 88 / 1e-18 PATL1 PATELLIN 1 (.1) AT3G51670 86 / 4e-18 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT5G47730 49 / 5e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36490 46 / 4e-05 ATSFH12 SEC14-like 12 (.1) AT3G24840 46 / 5e-05 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 45 / 7e-05 ATSFH3 SEC14-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031752 [exp] 546 / 0 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038435 [exp] 169 / 6e-47 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023378 [exp] 163 / 1e-46 AT1G30690 247 / 1e-77 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001542 [exp] 105 / 3e-24 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009458 [exp] 99 / 3e-22 AT4G09160 275 / 2e-87 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001269 [exp] 93 / 2e-20 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 92 / 3e-20 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10033895 [exp] 91 / 3e-19 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 89 / 8e-19 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461400 [exp] 141 / 6e-37 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G105900 [exp] 128 / 3e-32 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 127 / 1e-31 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 112 / 2e-26 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 111 / 3e-26 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 106 / 2e-24 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 98 / 9e-22 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 97 / 1e-21 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 88 / 9e-19 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G004000 [exp] 55 / 4e-08 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031176 pacid=23151085 polypeptide=Lus10031176 locus=Lus10031176.g ID=Lus10031176.BGIv1.0 annot-version=v1.0 ATGGCAACTGAAAGCATCTCAGAGAAGCCTCCCATGGTTTCTGAATCCCAAGAATCACAAGGTCAGCAACAACTCAAACAACCATCACCGAAATCCACGA CTACAACTATGATAGATGCGGCTGCTGCTGCTGCTACTCCTCCCTTGGAACAACAACAACAACCAAACCCACCATCCTCAACAGAAGAACACCATGTTCC TCCTGAACAGCCTGCAATAGTTGATATTGTCGAGAAGGTGATAGATCAGCCAACACCTCAACCTATCCAAGAACAGAAACAACAAGAACACCAACAGCAA CAACAACAACCTGACTCTCAGGAAAAACGACAAGAATCACCTGCAAAAGGAAATGAAGCTCCTTTGAACGTTACTGAGAATGAGAAAGTTATCCCTGTGG AAAAGGAGGATCTTTCTGCCTCCCAGGTTAAGGAGGAGCCAAAGGAAATGGTAATAAAAGCTGAAGCATCACAAGAAGAAGGCAAGAGTCCTGATGGTGG GAAGAAAGCTGAGGAAGTGGTTGTTCAGCAAAAAGAAGTCACCTTTGCTGTTGACGAAATCGAGAAGAACAAGGGTGTTCATGAGGAAAGCTCTTCGTCT CGAGAACAAACCGTTCTCCTCTCCGATTTGAAAGAGTACGAGCGCAAGGCGTTGCTGGAACTCAAATCCAAGATCGAAGAAGCTGTCCTGACCAACAAAT TCTTCGAGGACAAACCTGAAGATGATGAAAAGGTCAAACCTTCAGATCAACAGAAGGAAAAATCCGAGATGACTGAAGGCAGCAAAGGAGAAACTAAACA AACAGAAGCAGAAGATGAGAATAAAGTCAAAGATGAAACCTTGACCGCAGAGAAAGAACGGAAAGGGAAAGAGATTCTGATTGATGATTCTGCTGTTGTT AATCATCAGAATCAGAATCTTTCTCTATGGGGGGCCTCGTTGATGCCAAGCAAAGGAAACGCGAGCACGGACGTGGTGCTCCTGAAATTCCTGAGGGCAA GAGAGTTTCGTGTGATCGAAGCATTCGAAATGCTGAAAAACACCTTGAAATGGAGGAAGGAGAACAAAATCGACTCGATTCTGGGCGAGAAGGACGACCA GACCGATCATCTCGATCCGGTTGTGTACGAGGACGGCCATGACCGGGAGGGACACCCGATCTGTTACAATGTGTACGGAATGCTGGGATTCGACAAGGAT TCGACAAGGCTGCTGATAAGATGCTTGGAGATGAAGAAAAGAGGGAGAGGTTTATGA
AA sequence Show only first row Show all	>Lus10031176 pacid=23151085 polypeptide=Lus10031176 locus=Lus10031176.g ID=Lus10031176.BGIv1.0 annot-version=v1.0 MATESISEKPPMVSESQESQGQQQLKQPSPKSTTTTMIDAAAAAATPPLEQQQQPNPPSSTEEHHVPPEQPAIVDIVEKVIDQPTPQPIQEQKQQEHQQQ QQQPDSQEKRQESPAKGNEAPLNVTENEKVIPVEKEDLSASQVKEEPKEMVIKAEASQEEGKSPDGGKKAEEVVVQQKEVTFAVDEIEKNKGVHEESSSS REQTVLLSDLKEYERKALLELKSKIEEAVLTNKFFEDKPEDDEKVKPSDQQKEKSEMTEGSKGETKQTEAEDENKVKDETLTAEKERKGKEILIDDSAVV NHQNQNLSLWGASLMPSKGNASTDVVLLKFLRAREFRVIEAFEMLKNTLKWRKENKIDSILGEKDDQTDHLDPVVYEDGHDREGHPICYNVYGMLGFDKD STRLLIRCLEMKKRGRGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	0	1
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	1.0	0.9422
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	1.4	0.9287
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	1.7	0.9276
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	4.2	0.8839
AT5G07740			actin binding (.1)		Lus10015725 [exp]	4.2	0.8682
					Lus10033476 [exp]	4.5	0.9026
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	6.7	0.8852
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	7.9	0.8700
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	8.7	0.8450
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	9.4	0.8628

Compare expression of checked genes

Lus10031176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.