Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79230 548 / 0 STR1, ATRDH1, ATMST1, ST1 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3) AT1G16460 491 / 3e-175 STR2, ATMST2, ATRDH2 ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, rhodanese homologue 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031753 [exp] 746 / 0 AT1G79230 553 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069300 [exp] 584 / 0 AT1G79230 575 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3) Potri.005G095300 [exp] 521 / 0 AT1G79230 523 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10031177 pacid=23150958 polypeptide=Lus10031177 locus=Lus10031177.g ID=Lus10031177.BGIv1.0 annot-version=v1.0 ATGGCATCCACCAGTATTGTCAGAACTCTGCTTGCTCGTCGCTTCACCCAATTCTCCTCCTCCTCTTCTCCTCATCTTTCCCAAGCTCCCGGCCGATTCA CCTCTCTCTTCACCTCCAACAAGGTGCAGTGGATTAGCCCTACAAGAGCATCTTACAAGACATCTAGTTTGATACCTCGTGCTATGGCTTCCACATTAGG AGGGAAAGCTACTTTTTCAACGCAGTCGTTATCCACCAGTGAACCCGTTGTTTCTGTCGATTGGCTTCATTCCAACCTAAAGGCACCTGACTTAAAGGTT CTGGATGCATCTTGGTATATGCCAGATGAGCAGAGGAATCCAAGTCAAGAGTATCAGGTTGCTCATATTCCTGGAGCCCTGTTCTTTGATGTAGATGGTA TTTCAGATCAAACATCAAATTTGCCACACATGTTGCCAATGGAGGAAGCTTTTGCAGCTGCTGTTTCTGCTCTAGGAATCGAGAAGAAAGATGGAGTGGT TGTGTATGACGGGAAGGGAATTTTCAGTGCAGCTCGTGTCTGGTGGATGTTCAGAGTTTTCGGACATGATAAAGTTTGGGTGTTGGATGGAGGACTTCCG AGATGGCGTGCTTCGGGATATGATGTTGAATCTAGTGCTTCTAGTGATACTATCTTGAAAGCCAGTGCTGCAAGTGAAGCGATACAAAAAGTATATCAAG GCCAAGCTGTTGGTCCAGTGACATTCGAGACAAAGTTCCAGCCTCAACTTGTCTGGACGCTTGAGCAGGTTCAAAGAAACATTGATAACAAGACATACCA ACAAATAGACGCCCGTTCACAAGCAAGGTTCGATGGTGCTGCACAGGAACCGCGAAAGGGAGTTAGAAGTGGTCATGTACCTGGAAGCAAGTGCATTCCT TTTCCTCAGATGCTCGATTCATCATCACAAACACTCTTACCAGCAGACGAGTTAAAGAAACGATTTGACCAAGAAGGCATCTCTATGGAAGCTCCAGTTG TTACCTCGTGTGGAACCGGTGTAACTGCTTGCATTCTTGCTCTGGGTCTTCACCGACTTGGGAAACAAGATGTACCAGTGTATGATGGATCGTGGACGGA ATGGGGTGCTCATCCCGAGACCCCTGTCGAGACTTCGGAGACCCGGCCTGAGTAG
AA sequence Show only first row Show all	>Lus10031177 pacid=23150958 polypeptide=Lus10031177 locus=Lus10031177.g ID=Lus10031177.BGIv1.0 annot-version=v1.0 MASTSIVRTLLARRFTQFSSSSSPHLSQAPGRFTSLFTSNKVQWISPTRASYKTSSLIPRAMASTLGGKATFSTQSLSTSEPVVSVDWLHSNLKAPDLKV LDASWYMPDEQRNPSQEYQVAHIPGALFFDVDGISDQTSNLPHMLPMEEAFAAAVSALGIEKKDGVVVYDGKGIFSAARVWWMFRVFGHDKVWVLDGGLP RWRASGYDVESSASSDTILKASAASEAIQKVYQGQAVGPVTFETKFQPQLVWTLEQVQRNIDNKTYQQIDARSQARFDGAAQEPRKGVRSGHVPGSKCIP FPQMLDSSSQTLLPADELKKRFDQEGISMEAPVVTSCGTGVTACILALGLHRLGKQDVPVYDGSWTEWGAHPETPVETSETRPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	0	1
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	1.4	0.8894
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	7.7	0.8091
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	8.8	0.8826
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	9.0	0.8755
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	9.8	0.8699
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	10.5	0.8698
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	11.2	0.8605
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	12.0	0.8367
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	12.4	0.8573
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	13.4	0.8368

Compare expression of checked genes

Lus10031177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.