Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031754 [exp] 0 / 1 AT3G12830 170 / 2e-55 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031178 pacid=23151094 polypeptide=Lus10031178 locus=Lus10031178.g ID=Lus10031178.BGIv1.0 annot-version=v1.0 ATGAAGCAGCTAATCCGCCGCCTCTCACGCGTCGCCGACTCCTCCCAGTACTCCCTCCTCCGCTCCGAATCCCGATCCTGCCGCGCAGCCGCCTCCTCCA CCGCCGTCCGCCGCGCCGAATCCTTCCGATCTTTGGTCAAATCCGCCAACAGATCCAGCGGCGGGAAGGCCCTCCCGCAAGGATACCCCGCAAGGATACG TCCCCGTCTACGTCGGCGACGAGATGGAGCGGTTCGTCGTCAGCGCCGAGCTCCTCAACCACCCTGTCTTCGTCGTACTCCTCAACCGCTCCGCTCAGGA GTACGGCTACGAGCAGCAAGGCGGCCTCCGCATCCCCTGCCACGTGTTGGCCTTCGAGCGGGTCATGGAGGCGATTCGCCTCGGCCTTCAGTCCCACGAC CTCGACGACCTCCTCATCGCCGCCGCCTCCTCTTCTCCCTCCGCCGACGGATACTTATGAAACTAGGATCTGTTTGCCGCTTAATTTTTTCTTTTTTATA A
AA sequence Show only first row Show all	>Lus10031178 pacid=23151094 polypeptide=Lus10031178 locus=Lus10031178.g ID=Lus10031178.BGIv1.0 annot-version=v1.0 MKQLIRRLSRVADSSQYSLLRSESRSCRAAASSTAVRRAESFRSLVKSANRSSGGKALPQGYPARIRPRLRRRRDGAVRRQRRAPQPPCLRRTPQPLRSG VRLRAARRPPHPLPRVGLRAGHGGDSPRPSVPRPRRPPHRRRLLFSLRRRILMKLGSVCRLIFSFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56150			SAUR-like auxin-responsive pro...		Lus10031178 [exp]	0	1
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	2.4	0.7424
AT3G12830			SAUR-like auxin-responsive pro...		Lus10031754 [exp]	5.1	0.7828
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	11.1	0.7281
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	15.0	0.7342
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	17.1	0.6888
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	19.0	0.7213
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	26.0	0.7059
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	29.6	0.6718
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	31.1	0.7203
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	32.1	0.7097

Compare expression of checked genes

Lus10031178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.