Plant FIBer expression Database

Lus10031179 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79160 155 / 5e-47 unknown protein
AT1G16500 147 / 2e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031755
[exp]
304 / 3e-105 AT1G79160 201 / 1e-64 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G096800
[exp]
182 / 3e-57 AT1G79160 209 / 7e-68 unknown protein
Potri.007G067300
[exp]
181 / 6e-57 AT1G79160 164 / 3e-50 unknown protein
Potri.011G153600
[exp]
98 / 5e-25 AT1G79160 124 / 6e-35 unknown protein
Potri.001G446800
[exp]
88 / 4e-21 AT1G79160 113 / 7e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10031179 pacid=23151104 polypeptide=Lus10031179 locus=Lus10031179.g ID=Lus10031179.BGIv1.0 annot-version=v1.0
ATGGCGGCTGAAGTGAGCTCTCTCATAAGAGGCCTGAACGGCTACAAAGTCTCCGCCGATGATCGGAACAAGGTCAGCGAGTCCGCTCTGTTCACAAGAG
ATTTACTCGGCGGCAGCGGCGGCGGAAGTTCCAGTATCGGTGACGGCTCAGAGAACAACCCGTTTCAGGAATTGGACCTCGATGTTCAAGTACCCACCGG
CTGGGAAAAACGCCTCGATCTAAAGTCGGGGAAGGTTTACTTGCACAGGAATAATTCATCGTCCTCCAACAATCAACAAATGTTTACGAAAATTGAGGAT
TTGGGTTCGCCAGCGGCGCCGTCGAAGGTCACTCTGAATCTCTTCGACGAGAGCAGCTTGGAGCTGAAGCTAACCAACGCGGCGGAGGTGGCGGCGGCGT
CGACGTCTGTGGGGCCGTACTACCAGAGCGTTTGCACGCTGGACAAAGTGAAGTCGGCGCTGGAGAGAGCGGAGAAGGAGCCGGCGGCGGGGAGAAAGAG
GTCTCCTTCGTATTCTAATACGTCGTCGTCTAATCATCAAGGGACAGAGGAGAAATCGGCAGCGGCGGCTGCTTCTCCGGTGGCGGCGGGGTGTCCTGGT
TGTTTGTCGTACGTTCTGGTCATGAAGAACAATCCAAAGTGTCCGAGGTGTAATTCGATTGTTCCGATGCCGGCCATGAAGAAGCCGAGGCTTGATTTGA
ACATGTCGATTTGA
AA sequence
>Lus10031179 pacid=23151104 polypeptide=Lus10031179 locus=Lus10031179.g ID=Lus10031179.BGIv1.0 annot-version=v1.0
MAAEVSSLIRGLNGYKVSADDRNKVSESALFTRDLLGGSGGGSSSIGDGSENNPFQELDLDVQVPTGWEKRLDLKSGKVYLHRNNSSSSNNQQMFTKIED
LGSPAAPSKVTLNLFDESSLELKLTNAAEVAAASTSVGPYYQSVCTLDKVKSALERAEKEPAAGRKRSPSYSNTSSSNHQGTEEKSAAAAASPVAAGCPG
CLSYVLVMKNNPKCPRCNSIVPMPAMKKPRLDLNMSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G79160 unknown protein Lus10031179
[exp]
0 1
AT5G17165 unknown protein Lus10002135
[exp]
3.6 0.8493
AT5G20910 AIP2 ABI3-interacting protein 2, RI... Lus10034667
[exp]
6.2 0.8480
AT2G48010 RKF3 receptor-like kinase in in flo... Lus10027970
[exp]
10.7 0.8167
AT5G01830 ARM repeat superfamily protein... Lus10006090
[exp]
13.2 0.8228
AT5G01750 Protein of unknown function (D... Lus10002477
[exp]
15.5 0.8171
AT5G01830 ARM repeat superfamily protein... Lus10025244
[exp]
18.5 0.7993
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Lus10018367
[exp]
26.5 0.7675
AT1G14870 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1... Lus10043325
[exp]
32.1 0.7885
AT5G58375 Methyltransferase-related prot... Lus10042227
[exp]
34.1 0.7831
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Lus10028157
[exp]
35.2 0.7834

Lus10031179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.