Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06040 172 / 9e-55 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) AT1G70190 105 / 2e-28 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) AT4G37660 98 / 7e-26 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT4G36420 89 / 3e-22 Ribosomal protein L12 family protein (.1) AT2G03130 60 / 5e-12 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G27850 58 / 1e-10 RPL12-C ribosomal protein L12-C (.1) AT3G27830 58 / 2e-10 RPL12-A ribosomal protein L12-A (.1) AT3G27840 48 / 5e-07 RPL12-B ribosomal protein L12-B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031756 [exp] 315 / 9e-111 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10036228 [exp] 100 / 2e-26 AT1G70190 238 / 3e-80 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10038367 [exp] 100 / 2e-26 AT1G70190 243 / 3e-82 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10023839 [exp] 94 / 2e-24 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10000093 [exp] 94 / 2e-24 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10041783 [exp] 94 / 5e-24 AT4G36420 174 / 5e-56 Ribosomal protein L12 family protein (.1) Lus10028336 [exp] 92 / 3e-23 AT4G36420 176 / 1e-56 Ribosomal protein L12 family protein (.1) Lus10021011 [exp] 92 / 4e-23 AT4G37660 157 / 3e-49 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10013078 [exp] 64 / 2e-12 AT3G27830 175 / 7e-56 ribosomal protein L12-A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077200 [exp] 230 / 2e-77 AT3G06040 132 / 3e-39 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Potri.003G074800 [exp] 108 / 1e-29 AT1G70190 204 / 1e-66 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Potri.004G224300 [exp] 101 / 5e-27 AT4G37660 154 / 4e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Potri.007G019100 [exp] 99 / 5e-26 AT4G36420 127 / 2e-37 Ribosomal protein L12 family protein (.1) Potri.001G346100 [exp] 60 / 3e-11 AT3G27830 146 / 1e-44 ribosomal protein L12-A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00542 [flax] [poplar] Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031180 pacid=23151020 polypeptide=Lus10031180 locus=Lus10031180.g ID=Lus10031180.BGIv1.0 annot-version=v1.0 ATGAAGCTCATTGCACTGGCAAGATCATTCCGCTCCTCTCCGGCAGCCATCCGCGAGATCAATGGCTTCTTACAGGTCAGATTTTTCCAGCACGACTTCG TTCCCAGAGACCCATCGGCGAAGCCGACGAAGTACAAGTATCCCGAAGTCTACAATCCGTACGGTCCGAGACCACCTCCATCAGACAAAATCATTCAGCT CGCTGAGCAAATCGCTGCGTTACCTCTCGACGAGAGGAAGCAAATCGGCCCTGCTCTCGGGTTGAAGCTGAGCCATCCGAAGCTGGAGACGATCTCTACG GAAGGAATGGAGCTTGGACCAGCTGGATCGGGAGGTGGATCGGCGGCTGGGAAGGCGGTGGAGGAGAAGAAGGAGAAGACTGCATTCGACGTTAAATTGG AGAAGTTTGATGCAGCTGCGAAGATCAAAGTGATTAAAGAAGTTCGAGCTTTCACGAACTTGGGGTTGAAAGAAGCTAAGGAATTGGTTGAGAAAGCTCC CGTTGTGCTTAAACAAGGAGTCACCAAAGACGAAGGGAATAGTGTCATTGAGAAGATTAAGGCTGCTGGTGGTGTTGCTGTCATGGAGTAA
AA sequence Show only first row Show all	>Lus10031180 pacid=23151020 polypeptide=Lus10031180 locus=Lus10031180.g ID=Lus10031180.BGIv1.0 annot-version=v1.0 MKLIALARSFRSSPAAIREINGFLQVRFFQHDFVPRDPSAKPTKYKYPEVYNPYGPRPPPSDKIIQLAEQIAALPLDERKQIGPALGLKLSHPKLETIST EGMELGPAGSGGGSAAGKAVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKELVEKAPVVLKQGVTKDEGNSVIEKIKAAGGVAVME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06040			Ribosomal protein L12/ ATP-dep...		Lus10031180 [exp]	0	1
AT3G16780			Ribosomal protein L19e family ...		Lus10038417 [exp]	5.9	0.9143
AT3G53740			Ribosomal protein L36e family ...		Lus10016466 [exp]	8.0	0.8897
AT5G59850			Ribosomal protein S8 family pr...		Lus10040309 [exp]	16.5	0.8793
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	18.8	0.8754
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	22.2	0.8570
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10037964 [exp]	26.6	0.8691
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Lus10020221 [exp]	26.9	0.8184
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	27.1	0.8585
AT5G28060			Ribosomal protein S24e family ...		Lus10000938 [exp]	32.6	0.8625
AT3G06040			Ribosomal protein L12/ ATP-dep...		Lus10031756 [exp]	36.0	0.8249

Compare expression of checked genes

Lus10031180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.