Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60990 651 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 334 / 4e-110 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT4G16630 271 / 5e-83 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 250 / 2e-76 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 247 / 1e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 241 / 3e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 229 / 1e-69 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 230 / 3e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G61240 226 / 1e-68 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G77030 232 / 4e-68 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031761 [exp] 826 / 0 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 365 / 4e-121 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 365 / 8e-121 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10042754 [exp] 261 / 5e-79 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10028644 [exp] 249 / 2e-74 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10018941 [exp] 247 / 2e-73 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10027240 [exp] 238 / 8e-72 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 238 / 8e-72 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 236 / 2e-71 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068800 [exp] 704 / 0 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 653 / 0 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 587 / 0 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 344 / 5e-114 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.005G241300 [exp] 265 / 7e-81 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 243 / 3e-72 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.012G045800 [exp] 239 / 2e-71 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 233 / 5e-71 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.009G045300 [exp] 233 / 4e-70 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 233 / 4e-70 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10031182 pacid=23151047 polypeptide=Lus10031182 locus=Lus10031182.g ID=Lus10031182.BGIv1.0 annot-version=v1.0 ATGGCTGAAGAAGCTGAAGATGTGAAGACGTTCACAGAGTTGGGGATATGCGATGATTTGGTGAAGGCCTGCGATGCGCTGGGATGGAAAGCCCCGACGA AGATACAAGTGGAGTCAATCCCGCACGCGCTGGAAGGCAAAGACGTGATTGCCCTGGCACAAACAGGTTCGGGGAAAACAGGCGCGTTCGCACTCCCCAT AATCCAGTCGCTCCTCACCGAGTCCTCTAAGCAGAAGTCGATCATGGCATTCTTCGCTTGCGTGCTGTCGCCCACGAGGGAGCTGGCGATTCAGATAGCT GAGCAGTTCGAAGCTCTGGGGTCTGCTATTGGTGTCAAATGTGCTGTCCTCGTTGGTGGGATAGATATGATTCAGCAAGCTGCTGCCCTTGGAAAGTGGC CTCACATTGTGGTTGGCACACCTGGGCGGCTTATGGATCATCTCACAAACACGAAAGGGTTCTCTCTTCGCACATTGAAGTACTTGGTCTTGGATGAAGC TGACAGGTTGCTGAATGAGGACTTTGAGAAATCTCTAGATGAAATTCTGAGTTCTATACCAACAGACCGGAAAACTTACTTGTTTTCTGCAACCATGACT AAAAAGGTGAAGAAACTTCAGAGGGCTTGTTTGAAGAATCCTGTCAAGATAGAAGCAGCATCTAAATACTCCACAGTTGATACGTTAAAGCAGCAATATT TCTTCATTCCTGCCAAGCATAAGGATTGCTATCTCGTGTACATTCTGACCGAAATGTCAGGAAGCACTTCCATGGTATTCACTCGAACATGTGATGCAAC AACATTGTTGGCTTCGGTTCTTCGGAATTTGGGGCTAAGGGCCATCCCGATCAATGGGCACATGACGCAGTCAAAGAGACTTGGAGCCTTGAACAAGTTT AAAGCTGGAGAATGCAGCATTCTTATATGCACTGATGTGGCGAGTAGAGGACTGGATATTCCGTCGGTGGATATGGTTATTAATTATGACATTCCTTCCA ACTCAAAGGACTATATCCATCGCGTGGGAAGAACTGCTCGTGCTGGTCGTTCTGGTGTTGCAATATCGCTGGTGAATCAGTATGAACTCGAGTGGTTTAT ACAGATAGAGAAGCTTATCGGTAGGAAACTGGACGAGTTTCCTGCTGACAAAGAGGAAGTACTAATGTTGCTAGAAAGAGTCACGGAAGCCAAAAGGATT TCCCAAACGAAATTGAAAGAGGAAGGAGGCAACAGGAAGAGGAGGGGTGGAGGAGGAGATGATGACCAAGACGACGAGGTTAGCAGATATTTAGGTGGTG GCAAACATGACAAGAAGTCCAACAACAAGTTTAAGAAAAACAAAAGAGGATGA
AA sequence Show only first row Show all	>Lus10031182 pacid=23151047 polypeptide=Lus10031182 locus=Lus10031182.g ID=Lus10031182.BGIv1.0 annot-version=v1.0 MAEEAEDVKTFTELGICDDLVKACDALGWKAPTKIQVESIPHALEGKDVIALAQTGSGKTGAFALPIIQSLLTESSKQKSIMAFFACVLSPTRELAIQIA EQFEALGSAIGVKCAVLVGGIDMIQQAAALGKWPHIVVGTPGRLMDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILSSIPTDRKTYLFSATMT KKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYFFIPAKHKDCYLVYILTEMSGSTSMVFTRTCDATTLLASVLRNLGLRAIPINGHMTQSKRLGALNKF KAGECSILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFIQIEKLIGRKLDEFPADKEEVLMLLERVTEAKRI SQTKLKEEGGNRKRRGGGGDDDQDDEVSRYLGGGKHDKKSNNKFKKNKRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	0	1
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	4.9	0.9443
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	5.4	0.9462
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	8.7	0.9356
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	9.5	0.9384
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10026904 [exp]	12.0	0.9320
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	13.5	0.9190
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	13.9	0.9256
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	14.1	0.9338
AT3G18020			Pentatricopeptide repeat (PPR)...		Lus10024513 [exp]	15.8	0.9092
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	16.9	0.9202

Compare expression of checked genes

Lus10031182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.