Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013984 [exp] 98 / 2e-24 ND / Lus10040835 [exp] 65 / 6e-13 ND 38 / 0.002 Lus10030826 [exp] 41 / 0.0002 AT4G22390 49 / 2e-07 F-box associated ubiquitination effector family protein (.1) Lus10027824 [exp] 41 / 0.0005 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10031773 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031183 pacid=23151142 polypeptide=Lus10031183 locus=Lus10031183.g ID=Lus10031183.BGIv1.0 annot-version=v1.0 ATGTCGAAAGTAGACGACGACGAGACAAACTCCGCGCGCAATGGCTACTGCATTGAGCCCGATGAGGTATCTAGCGCATCATCTCTGCTTAGGATCTGTG TTCGTCGTCGTGGACACCGTTTTTTTGCCAAAGGCCAAGATGGGTATTCTTCACCAGAATGCCCATCAAGAGTGCTGGTGTACTCGCTTCACACTGATAA CTGGACAGAGTTGAACGAGCTTAGGCATGATGTTGAGATAGCTAAATCCGTGGGATGCTACAGGTTCCTGAATGGCTTCTGTTTTTGGTTATGTGCTTCT CCTGTTGTTGTGCTGGCATTCGACATGAGAAAGCATGTTTTCCGGTTGATAAACGATCCTGTCAATGTACCTCTAGAAATGGCTCGTTATCATCATGGCA GGAAGCAACTTGTGATATACGAGGAGGATTCACTTGCTTTGTTTCTCAACCAGACAAGCGATTGGGAAAGCATGTATGATATGTGGTTGCTGCTGAATCA TGAAGAAGAAGATAAAAAGAATGGCGCTGGGTCAAAACTTTTAGTATTGGTCCGTTTGTTGATCGTGGTGTGCGAACATTTTCAGGGCTTGGAAGCTGGG AGGGTGGTGATGATGGTAAACAGAAGAAGCTAA
AA sequence Show only first row Show all	>Lus10031183 pacid=23151142 polypeptide=Lus10031183 locus=Lus10031183.g ID=Lus10031183.BGIv1.0 annot-version=v1.0 MSKVDDDETNSARNGYCIEPDEVSSASSLLRICVRRRGHRFFAKGQDGYSSPECPSRVLVYSLHTDNWTELNELRHDVEIAKSVGCYRFLNGFCFWLCAS PVVVLAFDMRKHVFRLINDPVNVPLEMARYHHGRKQLVIYEEDSLALFLNQTSDWESMYDMWLLLNHEEEDKKNGAGSKLLVLVRLLIVVCEHFQGLEAG RVVMMVNRRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031183 [exp]	0	1
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	2.2	0.9871
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	2.4	0.9925
					Lus10008791 [exp]	3.5	0.9925
					Lus10021851 [exp]	4.2	0.9925
					Lus10012440 [exp]	4.9	0.9925
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	5.5	0.9853
					Lus10026713 [exp]	7.0	0.9843
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	7.4	0.9663
					Lus10020451 [exp]	8.5	0.9841
AT4G13230			Late embryogenesis abundant pr...		Lus10011889 [exp]	9.0	0.9688

Compare expression of checked genes

Lus10031183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.