Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79220 354 / 2e-120 Mitochondrial transcription termination factor family protein (.1) AT5G64950 64 / 3e-11 Mitochondrial transcription termination factor family protein (.1) AT1G61990 61 / 4e-10 Mitochondrial transcription termination factor family protein (.1) AT2G21710 60 / 2e-09 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT5G55580 58 / 4e-09 Mitochondrial transcription termination factor family protein (.1) AT4G38160 51 / 4e-07 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT1G62110 51 / 7e-07 Mitochondrial transcription termination factor family protein (.1) AT4G02990 47 / 1e-05 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G03050 46 / 2e-05 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT1G62085 46 / 2e-05 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031762 [exp] 737 / 0 AT1G79220 353 / 4e-120 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 99 / 5e-23 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 84 / 2e-17 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 77 / 2e-15 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 65 / 3e-11 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 61 / 6e-10 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 59 / 3e-09 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 57 / 9e-09 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10042322 [exp] 54 / 9e-08 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069100 [exp] 442 / 2e-155 AT1G79220 390 / 2e-134 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 98 / 2e-22 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 94 / 5e-21 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 92 / 1e-20 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 89 / 2e-19 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 87 / 1e-18 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 87 / 1e-18 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 86 / 2e-18 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 82 / 4e-17 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 81 / 1e-16 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10031184 pacid=23151002 polypeptide=Lus10031184 locus=Lus10031184.g ID=Lus10031184.BGIv1.0 annot-version=v1.0 ATGAAACTAAACCGCTTTCTACGTTCTGGAATCTTCGGTGGATCGACAGCTCAGCGACGGTTTATCTGTTTCAGCAGAAATGTACTTGAAAGCGCATCCG ATCCCTGCTTCTCCAGCACACCCGCCACCTGTTCGACGATATGTCAAGCCGAAGTGGAAGAAGCTCCCAGGAACTCATTCGAGGTTTTCAAGAGATGGGG ATGCTCGGAAACTGATTTGGCCAAGATATTCACACGCAGGCCGGCTCTCCGAAATGCTGGCGTCCCACTCTTACAGTTCAAATTGAATGTACTCCAGAAC TTGGGTCTGAAAGCTCCAGACCTTGTCCAGATCATCAACTGCCGCCCTCATTTCCTGAGCTATCGCATGACTGGCTATTTTGACGAGCATATGGAATACT TCCTGGAGTTGTTTGGAACCAAAGAATCAGTACTCAAAGCCATCGTCAGGAATCCTTCCCTGTTAAGGTACGATTTGCAGAACAAGATCAAACCTGTTGT TGCATTGTATGAATCTATGGGCATTACCAAACAGAATTTCGCCAAAATGCTACTGTCTCGTCCTGCTTTGATCTCAAGAACTTATTTTGACGATGAGAAA ATGGAATGCATCCGTAAAACTGGGATTTCATCAAGCTCCAAGCTTTACAAATACTTGATTACGATCATAGGCATCTCGAAAACGGAAACTCTGTTAGCAA AAGTGGCGAACTTGGAGAAGTTCGGGTTTTCGGAAGAGGAAGTATGGAGTCTAGTTGGGCGTTCGCCTTACTTGTTGACATTAGCCATTGATAAAGTTCA GAGGAACATGACGTATGTTGTGGGAACAATGAAGCTTCCAGCAAGTGTGGTTCTGAAGCACCCGTTCTTGCTGTATTCTAATCTCGAGACCGTGTTGAAG CCTCGTATAATACTTGCGGGGAAATTGGAGGAGATGGGGCTTTCGCCGAAGATAGGAGGAATGGCTAACGTGATGAGGGTGATGAAGATGAGCGAAAAGA GGCTGATGAAGGCGTATATTTCGTGTCACCCTGAGGATATTGCTAATGAGTTGATGGCTTGTTATGAGAAGGCGAAAGGGCTCAAGAGATTAGCTCATGC CTCGAAGAAGTTGGTCTTTGAGAGGTTCCCGTTTTGA
AA sequence Show only first row Show all	>Lus10031184 pacid=23151002 polypeptide=Lus10031184 locus=Lus10031184.g ID=Lus10031184.BGIv1.0 annot-version=v1.0 MKLNRFLRSGIFGGSTAQRRFICFSRNVLESASDPCFSSTPATCSTICQAEVEEAPRNSFEVFKRWGCSETDLAKIFTRRPALRNAGVPLLQFKLNVLQN LGLKAPDLVQIINCRPHFLSYRMTGYFDEHMEYFLELFGTKESVLKAIVRNPSLLRYDLQNKIKPVVALYESMGITKQNFAKMLLSRPALISRTYFDDEK MECIRKTGISSSSKLYKYLITIIGISKTETLLAKVANLEKFGFSEEEVWSLVGRSPYLLTLAIDKVQRNMTYVVGTMKLPASVVLKHPFLLYSNLETVLK PRIILAGKLEEMGLSPKIGGMANVMRVMKMSEKRLMKAYISCHPEDIANELMACYEKAKGLKRLAHASKKLVFERFPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	0	1
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	3.9	0.8996
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	4.0	0.9169
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	8.9	0.8785
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	12.0	0.9009
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	14.4	0.8345
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	15.5	0.8504
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10033982 [exp]	16.1	0.8761
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	16.1	0.8643
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10038898 [exp]	17.0	0.8527
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	17.3	0.8220

Compare expression of checked genes

Lus10031184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.