Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56070 475 / 2e-163 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 424 / 3e-144 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT3G22980 175 / 3e-49 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G06220 144 / 2e-38 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 143 / 4e-38 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G13650 96 / 6e-22 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G39900 96 / 7e-22 Small GTP-binding protein (.1) AT2G31060 89 / 2e-19 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G08650 86 / 2e-18 Small GTP-binding protein (.1) AT1G45332 75 / 6e-15 Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031201 [exp] 491 / 1e-169 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 488 / 2e-169 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 487 / 8e-169 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10004749 [exp] 173 / 2e-48 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10043477 [exp] 143 / 3e-39 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 144 / 2e-38 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 140 / 3e-37 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10007250 [exp] 96 / 4e-22 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 94 / 3e-21 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065700 [exp] 469 / 5e-161 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 468 / 1e-160 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 466 / 9e-160 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 186 / 5e-53 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 148 / 6e-40 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 143 / 2e-38 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.017G079800 [exp] 90 / 4e-20 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 88 / 3e-19 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 86 / 9e-19 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 86 / 2e-18 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10031185 pacid=23150972 polypeptide=Lus10031185 locus=Lus10031185.g ID=Lus10031185.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTCACAGCTGAGGAGCTTCGTCGCATTATGGACTTCAAGCACAACATCCGTAATATGTCTGTCATTGCCCATGTCGACCATGGGAAATCCA CACTTACTGATTCTCTAGTGGCTGCTGCGGGTATTATTGCCCAAGAGGTTGCTGGAGATGTGCGGATGACAGATACCCGTGCAGATGAAGCAGAGCGTGG TATTACAATCAAATCCACTGGAATCTCTCTTTTCTATCAGATGACTGATGAGAGCATCAAGAGTTTCACGGGAAAGAGGGATGGGAGTGAGTACCTTATC AATCTCATCGATTCCCCTGGACACGTTGACTTCTCATCTGAAGTCACTGCTGCTCTCCGTATCACTGATGGTGCTCTTGTGGTCGTGGATTGTGTTGAGG GTGTCTGTGTGCAGACTGAGACTGTTCTTCGTCAAGCTTTGGGTGAAAGGATCAGGCCTGTGCTCACTGTGAACAAGATGGACAGGTGTTTCCTTGAGCT CCAAGTGGATGGAGAGGAAGCCTATCAGACGTTCCAGAGGGTTATTGAGAATGCTAATGTCATCATGGCAACCTATGAAGATCCTCTTCTCGGTGATGTC CAGGTGTACCCGGAGAAAGGAACTGTTGCCTTTTCCGCTGGTCTGCATGGATGGGCTTTTACGTTGACCAACTTTGCCAAGATGTATGCTTCTAAGTTTG GAGTGGACGAGGCCAAGATGATGGAAAGGCTGTGGGGTGAGAACGTCTTTGACCCTGCCACTTGTCATGCAAACCTGGCTTCCAGCTGCAGATGCTCTCC TAGAAATGATGATCTTTCACCTTCCGTCTCCTGCTACTGCCCAGAAGTACCGTGTGGAGAACTTGTATGA
AA sequence Show only first row Show all	>Lus10031185 pacid=23150972 polypeptide=Lus10031185 locus=Lus10031185.g ID=Lus10031185.BGIv1.0 annot-version=v1.0 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLFYQMTDESIKSFTGKRDGSEYLI NLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDV QVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENVFDPATCHANLASSCRCSPRNDDLSPSVSCYCPEVPCGELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	0	1
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	1.4	0.9274
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	1.4	0.9215
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	3.9	0.9205
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	4.5	0.9203
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	5.5	0.9141
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	5.7	0.9080
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	8.4	0.9039
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	8.5	0.9103
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	11.0	0.8872
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10028296 [exp]	11.5	0.8987

Compare expression of checked genes

Lus10031185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.