Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56070 861 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 824 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 359 / 2e-114 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 351 / 1e-111 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G22980 199 / 2e-55 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G62750 96 / 1e-20 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT2G45030 78 / 5e-15 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 77 / 6e-15 Translation elongation factor EFG/EF2 protein (.1) AT5G13650 42 / 0.0007 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031779 [exp] 790 / 0 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031763 [exp] 673 / 0 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031201 [exp] 665 / 0 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031129 [exp] 357 / 2e-113 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 356 / 4e-113 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 302 / 3e-99 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10004749 [exp] 213 / 2e-60 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031764 [exp] 169 / 6e-51 AT1G56070 158 / 8e-46 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004326 [exp] 98 / 2e-21 AT1G62750 1332 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065700 [exp] 883 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 881 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 880 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.006G190600 [exp] 361 / 4e-115 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.018G114900 [exp] 359 / 2e-114 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.009G152500 [exp] 206 / 5e-58 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G113500 [exp] 94 / 4e-20 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.002G177032 [exp] 74 / 3e-16 AT1G56070 106 / 1e-28 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G109900 [exp] 79 / 2e-15 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 78 / 4e-15 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV
Representative CDS sequence Show only first row Show all	>Lus10031186 pacid=23151005 polypeptide=Lus10031186 locus=Lus10031186.g ID=Lus10031186.BGIv1.0 annot-version=v1.0 ATGATTCCCGCTTCTGACAAGGGTAGGTTCTTTGCCTTTGGTCGTGTCTTTGCTGGTAAGGTATCTACTGGTGTGAAGGTGAGGATTATGGGTCCCAACT ACGTCCCTGGTCAGAAGAAGGATCTGTATGTGAAGAATGTCCAGAGAACTGTTATCTGGATGGGTAAGAGGCAGGAGACTGTGGAAGATGTTCCTTGTGG TAACACTGTTGCTTTGGTCGGTTTGGACCAATACATTACAAAGAATGCCACTTTGACCAACGAGAAGGAAGTTGACGCTCACCCAATCCGTGCAATGAAG TTCTCAGTATCCCCTGTTGTTCGTGTTGCTGTTCAGTGCAAGGTTGCTTCTGATCTGCCGAAGTTGGTGGAAGGTTTGAAACGTCTGGCCAAGTCTGACC CCATGGTTGTGTGTAGTATTGAAGAGTCTGGTGAGCACATCATTGCTGGTGCTGGAGAGCTTCACCTTGAAATCTGTTTGAAGGATCTTGTGGATGACTT CATGGGTGGTGCTGAGATCACCAAATCCGACCCTGTTGTGTCCTTCCGTGAAACTGTGCTTGATAAATCATGCAGAGTCGTCATGAGCAAGTCCCCCAAC AAGCATAACCGTCTGTACATGGAGGCCAGACCATTGGAGGAAGGATTAGCTGAGGCAATCGATGATGGCCGCATTGGCCCAAGGGATGACCCCAAGGTCC GTTCCAAGATCCTCTCTGAGGAGTTCGGCTGGGACAAGGATCTCGCCAAGAAGATCTGGTGCTTCGGTCCCGAGACCACCGGCCCTAACATGGTAGTGGA CATGTGTAAGGGAGTTCAGTACCTGAATGAAATCAAGGATTCAGTCGTGGCTGGGTTCCAGTGGGCATCAAAGGAAGGAGCACTGGCAGAAGAGAACATG AGAGGAATCTGCTTTGAAGTCTGTGATGTGGTTCTCCATGCTGATGCTATCCACAGAGGTGGAGGTCAGGTTATCCCAACAGCCAGGAGGGTCATCTATG CTTCCCAGCTGACTGCCAAGCCAAGGCTGCTCGAGCCAATCTATCTTGTGGAGATCCAAGCCCCAGAACAAGCTCTTGGAGGTATCTACAGTGTGCTGAA TCAGAAGCGTGGTCATGTTTTCGAAGAAATGCAGAGGCCTGGTACCCCACTGTACAACATCAAGGCGTACCTCCCTGTGGTCGAGTCCTTTGGGTTCTCG AGCACATTGAGGGCGTCTACTTCTGGACAGGCTTTCCCGCAGTGTGTGTTTGATCATTGGGAGATGATGATGTCAGATCCTTTGGAGGCTGGCACCCAGG CTTCCACTCTCGTTGCGGAGATCCGTAAGAGGAAGGGTTTGAAGGAGCAGATGACCCCCCTCTCCGATTTCGAGGACAAGCTGTAA
AA sequence Show only first row Show all	>Lus10031186 pacid=23151005 polypeptide=Lus10031186 locus=Lus10031186.g ID=Lus10031186.BGIv1.0 annot-version=v1.0 MIPASDKGRFFAFGRVFAGKVSTGVKVRIMGPNYVPGQKKDLYVKNVQRTVIWMGKRQETVEDVPCGNTVALVGLDQYITKNATLTNEKEVDAHPIRAMK FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLVDDFMGGAEITKSDPVVSFRETVLDKSCRVVMSKSPN KHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENM RGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPIYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFS STLRASTSGQAFPQCVFDHWEMMMSDPLEAGTQASTLVAEIRKRKGLKEQMTPLSDFEDKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	0	1
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	1.7	0.9646
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	3.0	0.9418
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	3.7	0.9612
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	4.5	0.9570
AT2G46900			unknown protein		Lus10010275 [exp]	4.7	0.9362
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	7.3	0.9123
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	7.5	0.9294
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	8.1	0.9597
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	8.7	0.9526
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	11.0	0.9361

Compare expression of checked genes

Lus10031186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.