Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16560 476 / 8e-170 Per1-like family protein (.1.2.3.4) AT5G62130 385 / 3e-134 Per1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031765 [exp] 686 / 0 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10015006 [exp] 410 / 6e-144 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4) Lus10038885 [exp] 408 / 4e-143 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4) Lus10027411 [exp] 380 / 7e-132 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4) Lus10031658 [exp] 310 / 5e-104 AT5G62130 328 / 3e-111 Per1-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065800 [exp] 530 / 0 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4) Potri.012G134300 [exp] 456 / 6e-162 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4) Potri.015G136600 [exp] 444 / 3e-157 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4) Potri.002G177300 [exp] 50 / 6e-08 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF04080 [flax] [poplar] Per1 Per1-like family
Representative CDS sequence Show only first row Show all	>Lus10031187 pacid=23151150 polypeptide=Lus10031187 locus=Lus10031187.g ID=Lus10031187.BGIv1.0 annot-version=v1.0 ATGATAGCACGGTGTTGGTTTGGCTTCTCCCTGGTGCTTTTATGTCTTCTGCAAACATCTGAAGCCAGTGCTGGTGATGCTGATCCTAAATACAGGATGT GTGTCACAATCTGTGAAAGAACTGGCTGTGTGGGAAGTACCTGCTTTCCTCAATGCAACTTTTCATCCGATACTGCTTCATATGATAGTCCACGGAACAC GCACGAACATATTTATCAGCGATGGAAACTGTGGGACTGCCAGAGTGATTGCAGGCACTTCTGCATGTTTACCAGAGAAGCTGAAAGAGAAAAACTTGGG TATGGTCCCATGAAATACCATGGTAAATGGCCCTTCAAACGAGTCTATGGCATCCAGGAGCCTGCCTCTGTGGCTTTTTCTGCAATCAACCTTGCAATGC ACTTTCATGGCTGGCTGTCGTTTGTTATTCTTCTCTACTACAAGTTGCCCCTGAAACAAGACAAGACGACTTACTATGAATTCACACCTTTGTGGCACAT CTATGGGCTCTTAGCTTGCAACTCCTGGTTCTGGAGTGTTGTTTTCCATACTCGAGATGTCGATTTTACGGAGAAGTTAGACTACTCATCTGCAGTGGCA TTACTGGGATACTCACTCATAGTGTCTGTACTACGAAGTTTTAACGTGAGGGAAGAGGCAGCAAGAGTCATGGTTGCTGCTCCCTTTCTTGCATTCGTGA CGACCCATATCTTGTTCCTCAACTTCTACAAAATGGATTACGGATGGAATATGAAAGTCTGTGTTGCTATGGGGGTGGCTCAGCTTCTCATATGGGCGAT TTGGGCTGTGACGAGCCGCCATCCGTCTCGTTGGAAGTTGTTGGTGCCTGTCCTGGGAGGAAGCCTCGCGATGCTGTTGGAAATCTACGATTTTCCTCCG TACGAAGGCTACTTCGATGCTCATGCAATCTGGCACGCCACCACGATCCCGCTTACGTACATCTTCTGGAGTTTCATTAGGGATGATGCCGAGTTCCGCA CCACAAACCTCATGAAGAAGGCCAAGTAG
AA sequence Show only first row Show all	>Lus10031187 pacid=23151150 polypeptide=Lus10031187 locus=Lus10031187.g ID=Lus10031187.BGIv1.0 annot-version=v1.0 MIARCWFGFSLVLLCLLQTSEASAGDADPKYRMCVTICERTGCVGSTCFPQCNFSSDTASYDSPRNTHEHIYQRWKLWDCQSDCRHFCMFTREAEREKLG YGPMKYHGKWPFKRVYGIQEPASVAFSAINLAMHFHGWLSFVILLYYKLPLKQDKTTYYEFTPLWHIYGLLACNSWFWSVVFHTRDVDFTEKLDYSSAVA LLGYSLIVSVLRSFNVREEAARVMVAAPFLAFVTTHILFLNFYKMDYGWNMKVCVAMGVAQLLIWAIWAVTSRHPSRWKLLVPVLGGSLAMLLEIYDFPP YEGYFDAHAIWHATTIPLTYIFWSFIRDDAEFRTTNLMKKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16560			Per1-like family protein (.1.2...		Lus10031187 [exp]	0	1
AT5G14680			Adenine nucleotide alpha hydro...		Lus10014545 [exp]	2.8	0.8172
AT3G48660			Protein of unknown function (D...		Lus10011353 [exp]	7.5	0.7920
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	12.8	0.8076
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	15.5	0.8070
AT5G08450			unknown protein		Lus10004299 [exp]	16.9	0.7871
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	26.8	0.7804
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	38.2	0.7757
AT1G16810			unknown protein		Lus10033383 [exp]	43.1	0.7738
AT4G16710			glycosyltransferase family pro...		Lus10018891 [exp]	43.5	0.7467
AT4G39300			unknown protein		Lus10026340 [exp]	46.3	0.7549

Compare expression of checked genes

Lus10031187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.