Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56970 468 / 4e-161 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 457 / 2e-157 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 448 / 2e-153 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT1G75450 416 / 1e-140 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT3G63440 382 / 1e-127 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 374 / 6e-124 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT5G21482 347 / 4e-114 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031765 [exp] 784 / 0 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10031200 [exp] 667 / 0 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10024289 [exp] 402 / 2e-135 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10027611 [exp] 349 / 1e-115 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10026471 [exp] 338 / 3e-110 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10003845 [exp] 317 / 1e-103 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031778 [exp] 289 / 6e-94 AT5G56970 190 / 2e-56 cytokinin oxidase 3 (.1) Lus10005317 [exp] 238 / 3e-73 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 239 / 1e-72 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066100 [exp] 545 / 0 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.006G152500 [exp] 532 / 0 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.002G030500 [exp] 432 / 3e-147 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 431 / 9e-147 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.003G203600 [exp] 366 / 1e-121 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G047900 [exp] 367 / 2e-121 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.001G020900 [exp] 365 / 4e-121 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 363 / 7e-120 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G221000 [exp] 339 / 5e-111 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10031188 pacid=23151041 polypeptide=Lus10031188 locus=Lus10031188.g ID=Lus10031188.BGIv1.0 annot-version=v1.0 ATGGAATCCAAACCGATTCAAATCCAAATCAACCTCCTCCCCTTAACAATATTCTTCATAACCCAATTCGCAACTGCCCAATTACTCAACTGTCCACTCC CCAACCAACTCGGTTCGCAGCTCAGAACCGATACGAAGTCGTTAGCCTCCGTCTCCGTCGACTACGGCAACATCGTCCAGGTCCAGCCCTCCGCCATCGT CTACCCTGCCTCGGCCGCCGACATCTCCCTCCTCATAACGACGTCGCACAGCTGCCGCACTCCTTACCGAGTCGCGGCCAGAGGTAACGGACACTGCACG CGCGGGCAGGACATGGTCAGCGACGGCGTCGTTTTGGACATGAAGAGCCTGACCCCGGGCCCGCTCGGCGGTGTCATCCGGGTCTCCAAGGACGACCCGG CTCACCCGTTCGCCGACGTGGCCGGTGGGACCCTGTGGGTTGACGTGCTGAACGCCACGCTAAGAGAAGGAGTTGCACCGGTGACGTGGACGGACTTCTT GTACTTGACCGTCGGCGGCACGCTTTCCAACGCTGGCATCGGCGGCCAGAGTTTCCGGTTTGGCCCCCAGATTTCGAATGTTCTGGAGATGGATGTCGTC ACAGGAAAAGGAGAGATGGTGACTTGCTCCGCAAGCAACAACCCTGAGCTGTACAATGGTGTTTTGGGCGGTTTGGGCCAGTTTGGAGTCATCACCAGAG CAAGACTCGCCTTGGCTCCCGCTCCCCAAAGGGTGAAATGGGCACGACTTCTTTACAGTAATTTTGTCCATTTTACCCGAGATCAAGAGAGCATCATTTC CAACAATGGAAGAGACCAACCGAATGCAGTTGACTATTTGGAAGGTCAACTTCTACTTGACAACGGCACCCCAAACACCTGGGAGACATTCTTCTTCCCA AGTGAAGCTCAATCCACAATAGCCTCTCTTGTCGCGAGAAACGGCATCGTTTACGTCCTTGAGCTCGCCGTGTACTACGACGCCACTAATGAACAAGTCA AGGATCAGCAACTGAAACAACTCATCAACTGGCTAAAGAACGACCATGGCCTAGCCTTTGTCCAAGACGTGACATACCAAGAGTTCCTAACCCGAGTCCA TCTCCCATACCCCAACACACAAGCACATCCATGGCTCAACCTCTTCGTCCCGAAATCCGCAATCTCGCAGTTCAACTCCGGCGTCCTCAGATCCATCGTC TTGCCACGAAACATCAGCACCGGACCCATTCTCCTCTACCCAATGAACCGAAACAAGTGGGATGTCAAGATGTCCGCGACTATACCGGATGAAGATGTGT TCTACACATTTGGGTTGCTAAGTGAGGCCAATGTCGACGAGTTACAGAAGCATATCGAGCTAAACGACGCCGTTTTGGAGTACTGTGTCAAGGCTGGAAT CAAGGTGGATCAGTATCTTCCTAGCTACTCGACCCAGCAAGAGTGGGCTAAGCATTTTGGGCCGAAATGGGCCACGTTTCAGCAGAGGAAGGCCCAGTTT GATCCTAAGTTCATTTTGTCCCCAGGCCAGAAGATCTTCAATTAG
AA sequence Show only first row Show all	>Lus10031188 pacid=23151041 polypeptide=Lus10031188 locus=Lus10031188.g ID=Lus10031188.BGIv1.0 annot-version=v1.0 MESKPIQIQINLLPLTIFFITQFATAQLLNCPLPNQLGSQLRTDTKSLASVSVDYGNIVQVQPSAIVYPASAADISLLITTSHSCRTPYRVAARGNGHCT RGQDMVSDGVVLDMKSLTPGPLGGVIRVSKDDPAHPFADVAGGTLWVDVLNATLREGVAPVTWTDFLYLTVGGTLSNAGIGGQSFRFGPQISNVLEMDVV TGKGEMVTCSASNNPELYNGVLGGLGQFGVITRARLALAPAPQRVKWARLLYSNFVHFTRDQESIISNNGRDQPNAVDYLEGQLLLDNGTPNTWETFFFP SEAQSTIASLVARNGIVYVLELAVYYDATNEQVKDQQLKQLINWLKNDHGLAFVQDVTYQEFLTRVHLPYPNTQAHPWLNLFVPKSAISQFNSGVLRSIV LPRNISTGPILLYPMNRNKWDVKMSATIPDEDVFYTFGLLSEANVDELQKHIELNDAVLEYCVKAGIKVDQYLPSYSTQQEWAKHFGPKWATFQQRKAQF DPKFILSPGQKIFN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	0	1
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	1.0	0.9674
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	2.8	0.9580
AT3G05550			Hypoxia-responsive family prot...		Lus10033002 [exp]	5.7	0.9545
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	6.0	0.9553
					Lus10026740 [exp]	12.2	0.9532
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	14.5	0.9471
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	15.3	0.9374
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	16.6	0.9376
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10003553 [exp]	16.7	0.9014
AT3G09950			unknown protein		Lus10039065 [exp]	18.5	0.9099

Compare expression of checked genes

Lus10031188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.