Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43000 253 / 7e-83 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 252 / 6e-82 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 229 / 8e-73 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 223 / 3e-69 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G02450 174 / 8e-51 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT1G61110 172 / 9e-51 NAC ANAC025 NAC domain containing protein 25 (.1) AT5G63790 171 / 1e-50 NAC ANAC102 NAC domain containing protein 102 (.1) AT1G69490 169 / 2e-50 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G15510 170 / 1e-49 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G04070 169 / 2e-49 NAC ANAC047 NAC domain containing protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031767 [exp] 330 / 8e-114 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10030478 [exp] 238 / 6e-75 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10036749 [exp] 238 / 1e-74 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 238 / 2e-74 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10038332 [exp] 231 / 4e-74 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10036194 [exp] 228 / 4e-73 AT3G12910 224 / 1e-72 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10015367 [exp] 230 / 8e-73 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007263 [exp] 228 / 4e-72 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10031766 [exp] 201 / 7e-64 AT3G12910 61 / 2e-11 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098000 [exp] 322 / 2e-109 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.007G066300 [exp] 318 / 4e-108 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G205400 [exp] 250 / 2e-81 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.002G057200 [exp] 249 / 6e-81 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.001G080900 [exp] 248 / 2e-80 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 239 / 4e-77 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.004G126901 [exp] 223 / 1e-69 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.017G082000 [exp] 223 / 2e-69 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.003G166500 [exp] 173 / 4e-52 AT5G13180 310 / 4e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.001G404400 [exp] 176 / 6e-52 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10031189 pacid=23150999 polypeptide=Lus10031189 locus=Lus10031189.g ID=Lus10031189.BGIv1.0 annot-version=v1.0 ATGAACTCTAGTACTATAACCTCTGATGATAACTGTGATGATCATCGGGATCGTGAGGAGGAGGAGGAAGAAGAGGAAGAAGACGACGACATTTCGCTAC CGGGGTTCCGATTCCATCCGACGGACGAAGAGCTTCTGAGCTTTTATCTACGGAGGAAAGTTGACAACAAGCCCCTCAGCATCGAGCTCATCAAGCAAGT TGATATCTACAAATATGATCCATGGGATCTTCCAAGATCAACTGGGGATGGAGATAAAGAAGGCTACTTCTTCTGTAGAAGAGGGAGGAAGTACAGGAAC AGCATCCGGCCAAATCGGGTTACCGGTTCCGGGTTCTGGAAAGCAACCGGGATCGACAAACCGGTTTACTCAATGGCCGGAGACAACTGCATTGGGCTGA AGAAGACTTTGGTTTACTACAGGGGCAGCGCCGGAAAGGGAACCAAAACCGATTGGATGATGCACGAATTTCGCCTCCCGACCTCGGATCAAACCGGTAC CAACAACATCAATAGCTACATCGCTAGCTTGGAATCCTCGAAGCTCATATCCGCCCAAGAAGCTGAGGTATGGACGATATGTCGAATCTTCAAGAGAAAT TCATCCAACAGAAAGTACACCCCAGACTGGAGAGAATTGTCCACCTCCAAACGGCCCCTTACTAACCCTAATTCCAACAATTACAACAACAACAACACCT CAGGAGCTACAAGAACTCATCAGCAACACTTCATCGACTTCACTGCCCCCCACGTCCAATCATTCGACACGAAACCCCCGACGAGCCAGCACCACATGGC GGGGCCAGCACAAGACGATGATCAATCCATCATCATGTCCACGATGATGATGATGGACAGATCCTCGTCTATTATTACACCATCCAGACCGACAACTGCA TTACATTCTACGAATTCTTCCTCTCATCATTCAGAGTTGGTGGCTCCTCAGAGCAGTTCCTCGATGGCTTCATCGACCTCGAACATTTCAAGCCCCTACG GGAACGATCAGTTCCTGACATACGGAGACTTCGACGAGCTTAGATCTGTGGTCGAGTTTGCCTTCGATCCTTCCAATAACTTCCTGTAA
AA sequence Show only first row Show all	>Lus10031189 pacid=23150999 polypeptide=Lus10031189 locus=Lus10031189.g ID=Lus10031189.BGIv1.0 annot-version=v1.0 MNSSTITSDDNCDDHRDREEEEEEEEEDDDISLPGFRFHPTDEELLSFYLRRKVDNKPLSIELIKQVDIYKYDPWDLPRSTGDGDKEGYFFCRRGRKYRN SIRPNRVTGSGFWKATGIDKPVYSMAGDNCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPTSDQTGTNNINSYIASLESSKLISAQEAEVWTICRIFKRN SSNRKYTPDWRELSTSKRPLTNPNSNNYNNNNTSGATRTHQQHFIDFTAPHVQSFDTKPPTSQHHMAGPAQDDDQSIIMSTMMMMDRSSSIITPSRPTTA LHSTNSSSHHSELVAPQSSSSMASSTSNISSPYGNDQFLTYGDFDELRSVVEFAFDPSNNFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031189 [exp]	0	1
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	3.3	0.8820
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10041626 [exp]	5.3	0.8740
					Lus10029825 [exp]	13.3	0.8465
					Lus10010256 [exp]	14.8	0.7576
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	16.0	0.8423
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	21.4	0.8539
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	29.7	0.8614
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	32.2	0.8535
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	36.0	0.8529
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	37.4	0.8526

Compare expression of checked genes

Lus10031189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.