Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16540 1009 / 0 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) AT1G30910 116 / 2e-28 Molybdenum cofactor sulfurase family protein (.1) AT5G44720 95 / 4e-21 Molybdenum cofactor sulfurase family protein (.1.2) AT5G51920 76 / 5e-14 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 75 / 2e-13 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 73 / 7e-13 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 73 / 7e-13 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 59 / 1e-08 unknown protein AT1G08490 48 / 3e-05 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031768 [exp] 1547 / 0 AT1G16540 1021 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10007754 [exp] 112 / 7e-27 AT1G30910 435 / 1e-154 Molybdenum cofactor sulfurase family protein (.1) Lus10018692 [exp] 112 / 1e-26 AT1G30910 432 / 2e-153 Molybdenum cofactor sulfurase family protein (.1) Lus10006342 [exp] 81 / 2e-15 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 79 / 8e-15 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 76 / 6e-14 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 74 / 4e-13 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 74 / 4e-13 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 69 / 1e-11 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066400 [exp] 1113 / 0 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.003G154900 [exp] 79 / 2e-15 AT1G30910 332 / 3e-114 Molybdenum cofactor sulfurase family protein (.1) Potri.007G036100 [exp] 76 / 6e-14 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 74 / 2e-13 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 71 / 2e-12 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 71 / 2e-12 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 67 / 5e-11 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.009G066000 [exp] 55 / 1e-07 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Potri.015G097000 [exp] 45 / 0.0002 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03473 [flax] [poplar] MOSC MOSC domain CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V CL0061 [flax] [poplar] PF03476 [flax] [poplar] MOSC_N MOSC N-terminal beta barrel domain
Representative CDS sequence Show only first row Show all	>Lus10031190 pacid=23151093 polypeptide=Lus10031190 locus=Lus10031190.g ID=Lus10031190.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGGAAGCAAGATTTCCTCAACGAATTCGGCAACGACTACGGCTATCCCGATGGTATCAGAGGCATTGATGAAATCCGAGCTACCGAATTCA AGCGATTGAGCAAAAACGGTGGCAACCTCTTCCCTCCTTACTTACTTTCACTAAATTCCGGCGTTCTTTCCATTTTTCGAATTTGCTTGCTTATTTTGAT TCTGCTTGTTCGTGAGTTGGCAGGTCTTGTGTACTTGGACCATGCCGGAGCAACCCTCTATTCAGAATCGCAGATGGAGCGAGTTCTGAGTGATCTCGCG GCCAATGTTTATGGAAATCCCCATAGCCAAAGCGATTGTAGCTCTGCAACAACCGAATCATTGAGGGAAGCGCGCCAACTGGTACTGGATTATTGCAATG CATCTCCAAAGGACTACAAATGTATATTCACGTCTGGCGCCACAGCAGCACTAAAGCTCGTGGGAGAGGCCTTTCCATGGAGCAGTGGCAGCAGTTACAT GTACACCATGGAGAATCACAATAGTGTGCTTGGAATTAGAGAATATGCTCTCAGTCGAGGGGCTGCAGCTTTTGCAGTTGATGTGGAATGTCCCATGCAA TCAGATGAAGCATCCACATGCCGTGTTCCTTCCTTTGAATTATCCACGCATCGTGTGCAAAGAAGAAATGAAAACATGATTCCAAATGATGAGGTGTTTA ACTTATTTGCCTTCCCATCCGAATGCAATTTCTCTGGCGTGAGATTTAACCTCGACATGGTGAAGCTAATTAAGGAAGACTCGGGCAGAATGTTAAGAGG TTCCCCATATGGCAAGGGGCGGTGGATGGTCTTGATCGATGCTGCAAAAGGATGCTCAACTGAACCACCAGATTTGTCCAAGTATCCCGCTGACTTTGTC ACAATCTCGTTCTATAAGCTATTTGGCTATCCTACTGGACTTGGAGCTCTGGTTGTTCGTAATGATGCTGCCAAGCTGCTGAAACCAACTTATTTCAGTG GAGGCACAGTCTCAGCGTCATTTGCTGATTTGGATTTCGTGAAAAGAAGAGAAAATATTGAAGAGATTTTCGAGGATGGTACTGCCTCATTTCTAAGCAT AGCGTCTATTCACCACGGTTTCAAAATACTCAACTCCTTAACCATGCCTGCGATTCTACGGCACACATCATCGCTTACCATTTATGTTAAGAAAATGCTT TTAGCCTCCAGGCATGGAAATGGGGCTAGTGTCTGCACAATCTATGGAAGTCATCCTGCAAAGATGACTGGCTATGTGTCTGGCCCAACTATATCTTTCA ACTTGAAAAGGCAAGATGGTTCATGGGTTGGTTACCGTGAATTTGAAAAACTGGCTTCTCTGTCTGGAATTCAGCTACGGACAGGGTGTTTCTGCAATCC AGGTGCATGTGCTAAGTACCTTGAGTTGTCTCATTTGGATCTTCTTTCAAACTTTGAGGCAGGACACGTTTGCTGGGATGATCATGACTTGATACGTGGA AAACCCACAGGAGCTGTTCGGATATCATTTGGTTACATGTCAACTTATGAAGATGCGAAGAAATTCATTGATTTCATCAAGGATTCATTTGTGTCCTTAG GAAATAAAGTTGAGAATGGGAATTTGTCAAGAGTAAAGTCCCTTTCTTTCTCAAATGAAGGATGTGAAAGAAACCTTCCATCTGATGTTTATCTACTCAA AGCCATTACTGTGTACCCCATTAAATCATGTGCAGGATTCAGAGTTGAAAGCTGGCCTCTGAGTAGTACTGGTTTACTACATGATAGGGAATGGCTTCTT AGAAGTGTAACTGGCGAAGTTCTGACTCAGAAAAAGGTTCCTGAATTGTGTTTCATCACTACTTCCCTTGACCTCAACAAAGGAACAATGACTGTAGACA CGCCTAGATGCAGAGATAAGTTACAGATCAGCCTCGACACAGATTCAACCATTGTTTCGAGAGAAGAAATCGAACTGCATGGTCAGAGATGCATAGTTCA GCAGTATGACGACAAGGTCAACAACTGGTTCAGCATCGTTGTGGGTCGTCCATGCGCTCTCTTACGATCTTCCGGCTCGAAGTACAACGCCAGCTTGGAC CCCAGCAGAACCACCGGCACCTGCCGGGAAACGAAAGGAAGAACCAATTTCCCAAACGAGGCACAGTTTTTGTTGATATCGGAGGAGAGCATATCCAACC TCAACTCGAGGTTAAGCTCGGTGGAAGTGAATCCATCAAGATTCCGGCCTAACCTTGTTATATCTGGAGGCGAACCTTATGCAGAAGATGGATGGACGAG TCTCCAAATTGGAAAAGCGCATTTTATATCGATTGGCGGATGCAACCGTTGCCAGATGATAAACTTGGTAGATCAATCTGGACAAGTTCTGAGGACAAAC GAACCATTGGCTACACTAGCTTCGTACAGAAGAGTAAAGGGTAAGATTCTGTTCGGGATACTTCTGAGGTACGAGGGTGGAAATGACGAAGACGATGATG TGTCGCGTACTGATTCGTGGCTTCGAGTGGGACAAACTGTTCATCCAGCTTCATGA
AA sequence Show only first row Show all	>Lus10031190 pacid=23151093 polypeptide=Lus10031190 locus=Lus10031190.g ID=Lus10031190.BGIv1.0 annot-version=v1.0 MEAGKQDFLNEFGNDYGYPDGIRGIDEIRATEFKRLSKNGGNLFPPYLLSLNSGVLSIFRICLLILILLVRELAGLVYLDHAGATLYSESQMERVLSDLA ANVYGNPHSQSDCSSATTESLREARQLVLDYCNASPKDYKCIFTSGATAALKLVGEAFPWSSGSSYMYTMENHNSVLGIREYALSRGAAAFAVDVECPMQ SDEASTCRVPSFELSTHRVQRRNENMIPNDEVFNLFAFPSECNFSGVRFNLDMVKLIKEDSGRMLRGSPYGKGRWMVLIDAAKGCSTEPPDLSKYPADFV TISFYKLFGYPTGLGALVVRNDAAKLLKPTYFSGGTVSASFADLDFVKRRENIEEIFEDGTASFLSIASIHHGFKILNSLTMPAILRHTSSLTIYVKKML LASRHGNGASVCTIYGSHPAKMTGYVSGPTISFNLKRQDGSWVGYREFEKLASLSGIQLRTGCFCNPGACAKYLELSHLDLLSNFEAGHVCWDDHDLIRG KPTGAVRISFGYMSTYEDAKKFIDFIKDSFVSLGNKVENGNLSRVKSLSFSNEGCERNLPSDVYLLKAITVYPIKSCAGFRVESWPLSSTGLLHDREWLL RSVTGEVLTQKKVPELCFITTSLDLNKGTMTVDTPRCRDKLQISLDTDSTIVSREEIELHGQRCIVQQYDDKVNNWFSIVVGRPCALLRSSGSKYNASLD PSRTTGTCRETKGRTNFPNEAQFLLISEESISNLNSRLSSVEVNPSRFRPNLVISGGEPYAEDGWTSLQIGKAHFISIGGCNRCQMINLVDQSGQVLRTN EPLATLASYRRVKGKILFGILLRYEGGNDEDDDVSRTDSWLRVGQTVHPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	0	1
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10033086 [exp]	5.7	0.7356
AT5G55060			unknown protein		Lus10043118 [exp]	6.9	0.7933
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	10.8	0.7685
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	11.4	0.8012
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	12.7	0.7448
AT5G06440			unknown protein		Lus10029362 [exp]	15.2	0.7111
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	17.1	0.7939
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	18.5	0.7402
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	19.5	0.7924
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	20.4	0.7653

Compare expression of checked genes

Lus10031190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.