Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12890 79 / 8e-17 ASML2 activator of spomin::LUC2 (.1) AT2G33350 70 / 2e-13 CCT motif family protein (.1.2) AT5G41380 69 / 3e-13 CCT motif family protein (.1) AT1G04500 69 / 6e-13 CCT motif family protein (.1) AT1G63820 66 / 4e-12 CCT motif family protein (.1) AT5G53420 49 / 9e-07 CCT motif family protein (.1.2.3) AT4G27900 49 / 1e-06 CCT motif family protein (.1.2) AT2G24790 46 / 1e-05 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT3G02380 46 / 2e-05 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G59990 45 / 2e-05 CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031770 [exp] 395 / 5e-139 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1) Lus10024655 [exp] 70 / 3e-13 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10032288 [exp] 69 / 4e-13 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10023727 [exp] 63 / 1e-10 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10014478 [exp] 61 / 1e-10 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10028137 [exp] 49 / 2e-06 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2) Lus10019027 [exp] 49 / 3e-06 AT5G53420 250 / 8e-83 CCT motif family protein (.1.2.3) Lus10005008 [exp] 48 / 4e-06 AT5G53420 254 / 2e-84 CCT motif family protein (.1.2.3) Lus10014919 [exp] 48 / 5e-06 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G097700 [exp] 98 / 1e-23 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1) Potri.007G066800 [exp] 89 / 3e-20 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.001G101200 [exp] 70 / 2e-13 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.003G130500 [exp] 68 / 8e-13 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.010G066100 [exp] 67 / 2e-12 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.008G171500 [exp] 67 / 4e-12 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.001G136700 [exp] 63 / 2e-11 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1) Potri.001G233600 [exp] 58 / 9e-10 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.012G014000 [exp] 50 / 7e-07 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.015G014000 [exp] 47 / 5e-06 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10031192 pacid=23151131 polypeptide=Lus10031192 locus=Lus10031192.g ID=Lus10031192.BGIv1.0 annot-version=v1.0 ATGGATCCTCAGCAGCAGCAGCAGCATTATCGATTCTTCTCCGACGAAGACGAGCTTTCGGAGATCATGATGATGTCTTTCTTCGCTAATCAAGACAACA TTAACAATTGCGCCTACAATGGTCCTAATAATCATTATGTTGATTACGGCCATTACTACCTTAATGCCGGCGGAGGATCATCATCATCATCATCAATCGA CCTTCTCACTACGACCCCGTCGTCCTCTTCGTCGGAGTACTCCGACGGCAGCAATAATAATCACTCCATGATGGCTACTAATTATGATCTGGCCTGCGAA ATGTTTAATATTGCCGCCGCCGCCGGTGGGGATAATATTCATCATAATGCTAATTGCGGAACAACGACATCGCTTTTAGTCGGATCATCTGACGTGGCTA ATTGTTATTGGCCGGTAGATGGGTTGTCCGGTAATTGCCCCCGACAACCTGCGCCTGCACCGGTTGCGGCCGGCGCAGTCGATAATTACCCCGGGACAGG GCAATTCTGTAATAATGGGGTGAAAGTTGGGCAATATACGGCGGAAGAGAGAAAGGACAGGATTCTGAGGTACCTTAAGAAGCGAAACCACAGAAACTTC AACAAAACCATCAAGTACGCGTGTCGGAAAACGCTGGCCGACAGAAGAGTGCGAGTTCGAGGGAGGTTCGCTAGGAACAACAGCGAGTTATCCGAAGACG AACAGAGAACGCCGCCGCCGCCGCCGCAGACGATATCCGAGAGCAACATCCACGNNNNNNNNNNNNNNAACGGCGGTTTACACCAATTCAACGACGGGGG GAACCAACTGGCGACGTGGCAAGGCGGTGAGAGATTAGAAGAGGATGAATGGCTACAAGAAGCAGTAGCGAGTCTGCTGTACGCGCCGTATAATAATTTC GGCACATGCAACGTACCTTAG
AA sequence Show only first row Show all	>Lus10031192 pacid=23151131 polypeptide=Lus10031192 locus=Lus10031192.g ID=Lus10031192.BGIv1.0 annot-version=v1.0 MDPQQQQQHYRFFSDEDELSEIMMMSFFANQDNINNCAYNGPNNHYVDYGHYYLNAGGGSSSSSSIDLLTTTPSSSSSEYSDGSNNNHSMMATNYDLACE MFNIAAAAGGDNIHHNANCGTTTSLLVGSSDVANCYWPVDGLSGNCPRQPAPAPVAAGAVDNYPGTGQFCNNGVKVGQYTAEERKDRILRYLKKRNHRNF NKTIKYACRKTLADRRVRVRGRFARNNSELSEDEQRTPPPPPQTISESNIHXXXXXNGGLHQFNDGGNQLATWQGGERLEEDEWLQEAVASLLYAPYNNF GTCNVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031192 [exp]	0	1
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031770 [exp]	1.4	0.9032
AT2G39855			unknown protein		Lus10009870 [exp]	3.9	0.8364
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	4.0	0.8947
AT5G37730			unknown protein		Lus10017628 [exp]	4.5	0.8088
					Lus10022875 [exp]	6.0	0.8473
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10002633 [exp]	6.5	0.8297
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	7.0	0.8289
					Lus10022013 [exp]	7.7	0.8051
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	7.9	0.8610
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	10.6	0.8137

Compare expression of checked genes

Lus10031192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.