Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16520 337 / 5e-115 unknown protein AT1G56080 288 / 4e-96 unknown protein AT4G15545 191 / 1e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031771 [exp] 577 / 0 AT1G16520 400 / 1e-139 unknown protein Lus10034001 [exp] 179 / 5e-53 AT4G15545 382 / 5e-133 unknown protein Lus10012775 [exp] 172 / 1e-50 AT4G15545 383 / 2e-133 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066900 [exp] 376 / 3e-130 AT1G16520 383 / 2e-133 unknown protein Potri.005G097600 [exp] 349 / 2e-119 AT1G16520 338 / 1e-115 unknown protein Potri.010G027400 [exp] 180 / 8e-54 AT4G15545 355 / 2e-122 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031193 pacid=23150946 polypeptide=Lus10031193 locus=Lus10031193.g ID=Lus10031193.BGIv1.0 annot-version=v1.0 ATGTCGCAGCTCGACAGTGAACAGGGAAGTGGAGGACGGAGCATCGTTGTTGCCGGCAGCGGCGGGCGGGACGTGCCGGACTTCAGTTTGCCGGATGAGG TTTTGGCCGTGATACCTGCAGATCCTTACGACCAGCTGGATCTAGCGCGCAAGATCACTTCCATGGCAATCGCTTCGCGAGTGTCGAATCTGGAAGCGGA GGGTTGCCTGCCTGGAAGCGGAGGTTGGCCTGCTGAAGCAGAGGATGAGCGAGAAGGATCGGGTCGTTTACGAGCTGGAAGAGAAAGCGTCTCGCATGCA ACGGGCGTTAAGCTCACGAGGGAAAGAGATTCTTTGGCAATTAACGTGAAGAAGCTTGGCCGAGATTTGACTAAGGTGGGAAACAGTATTATTCATACAC GAATTGAGTCTCTTTTGGAGAATTTCAAGAGACAGCTGATGCAGTCACTTACTGATGATAATTCTTCTCAACCGGAGGCTGTTGATATTAGAACCTATGA TCAATCTGTTCCAAGGGCTTATCCCGACAAAGATGAAGTAACAAATGGATATGCAAGTGAAAATTCATACAGCGGTTCTAATGACACAGGAGCAGTTGGT GAAGCTCCAAAGTATGGCGGACAGAGATTCTCCATAACTCCTTACATCACACCTCGGCTTACTCCGACTGCAACCCCAAAAACTATATCTGCAAGTGTAT CCCCTAGGGGTTACTCTGCGGCTGTTTCACCTAGGAGGACCTCCTCAGGTGTGGCATCTCCTACAAAGTCTCAATATGAAGGACGGACTGGCTATTCCCC ATGGTATTCATCTAGTCAACAGTCTTCAGCAGCCAACTCTCCTCCTCGTGGACGCTCTATGCCAGCACGGACTCCAAAAATCGACGGGAAGGAGTTCTTT CGTCAGGCCAGGAGCCGTCTCTCGTATGAACAATTCAGTGCATTTCTGGCTAACATCAAGGAACTAAATGCCCAACGGCAATCACGAGAGGAGACCTTGA GGAAAGCTGAAGAGATATTCGGGATGGACAGCAAAGATCTCTTCTTATCATTCCAAGGGTTGCTCAACCGTAGCAGCAGCATTGTACGCTGA
AA sequence Show only first row Show all	>Lus10031193 pacid=23150946 polypeptide=Lus10031193 locus=Lus10031193.g ID=Lus10031193.BGIv1.0 annot-version=v1.0 MSQLDSEQGSGGRSIVVAGSGGRDVPDFSLPDEVLAVIPADPYDQLDLARKITSMAIASRVSNLEAEGCLPGSGGWPAEAEDEREGSGRLRAGRESVSHA TGVKLTRERDSLAINVKKLGRDLTKVGNSIIHTRIESLLENFKRQLMQSLTDDNSSQPEAVDIRTYDQSVPRAYPDKDEVTNGYASENSYSGSNDTGAVG EAPKYGGQRFSITPYITPRLTPTATPKTISASVSPRGYSAAVSPRRTSSGVASPTKSQYEGRTGYSPWYSSSQQSSAANSPPRGRSMPARTPKIDGKEFF RQARSRLSYEQFSAFLANIKELNAQRQSREETLRKAEEIFGMDSKDLFLSFQGLLNRSSSIVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16520			unknown protein		Lus10031193 [exp]	0	1
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	1.7	0.8656
AT1G16520			unknown protein		Lus10031771 [exp]	3.7	0.8239
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	4.2	0.8629
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	4.9	0.8559
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	6.3	0.8468
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	9.5	0.8273
AT5G48500			unknown protein		Lus10020403 [exp]	10.7	0.8000
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	12.0	0.8293
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	12.3	0.8512
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	12.7	0.8381

Compare expression of checked genes

Lus10031193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.