Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53720 640 / 0 ATCYP59, CYP59 cyclophilin 59 (.1) AT1G53780 192 / 7e-54 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT2G36130 145 / 7e-41 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 131 / 4e-32 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT1G01940 120 / 9e-32 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 124 / 6e-30 ATPUB49 plant U-box 49 (.1) AT4G33060 115 / 3e-27 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 101 / 6e-24 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G21130 92 / 2e-21 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 90 / 7e-21 ROC1 rotamase CYP 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031772 [exp] 939 / 0 AT1G53720 639 / 0.0 cyclophilin 59 (.1) Lus10021335 [exp] 132 / 6e-36 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 127 / 5e-34 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 132 / 2e-32 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 131 / 3e-32 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10007794 [exp] 129 / 3e-31 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 128 / 4e-31 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10009237 [exp] 119 / 8e-31 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024831 [exp] 108 / 2e-24 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G097500 [exp] 687 / 0 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.016G075600 [exp] 140 / 6e-39 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G067000 [exp] 134 / 7e-36 AT1G53720 137 / 3e-37 cyclophilin 59 (.1) Potri.002G149700 [exp] 124 / 7e-33 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 132 / 2e-32 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.014G071600 [exp] 119 / 3e-31 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 122 / 2e-29 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.002G185200 [exp] 95 / 1e-21 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.004G144300 [exp] 96 / 3e-21 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G215800 [exp] 97 / 4e-21 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10031194 pacid=23151051 polypeptide=Lus10031194 locus=Lus10031194.g ID=Lus10031194.BGIv1.0 annot-version=v1.0 ATGTCGGTGCTAATAGTGACGAGCTTAGGGGATTTGGTGGTGGATTTGTTCCACGACCAGTGCCCCATGACCTGCAAAAACTTTCTGAAACTGTGCAAGA TGAAGTACTATAACGGATGCCTCTTCCACACTGTTCAGAAGGACTTCACCGCGCAGACTGGCGATCCTACTGGTGTTGGAGCTGGCGGTGATTCCTTATA CAAATTTGTTTATGGTGACCAAGCTCGCTTCTTCAGTGACGAAATTCATCACGATCTAAAGCATAAAAACACTGGAACAGTTGCGATGGCTAGTGCTGGT GAAAATTTGAACGCTTCACAGTTCTATATTACGTTACGTGATAACCTGGATTACCTTGATGGGAAGCATACTGTTTTCGGTGAGGTAGCAGAAGGGCTTG AAACCCTCTCGAGGATCAACGAAGCTTATGTAGATGAAAAGAACAGACCTTATAAGAATATAAGGATCAAACACACATATATACTTGATGATAATTTTGA TGATCCCCCACAGCTAGCTGAGTTGATCCCTGATGCTTCCCCGGAGGGAAAACCGAAGGATGAGGCTCTCGATGATGTGCGGCTCGAAGATGATTGGATT CCGTTGGATGAATATTTACGTCCAGAAGAACTTGAAGAGGTTTTTAGGGAAAAGGATGCACGTGCTAGTGCTGTTGTACTTGAGAGTATAGGGGACATTC CTGATGCCGACATAAAACCTCCTGATAATGTGCTGTTTGTTTGCAAACTGAATCCCCTCACTGAAGACGAGGACTTGAATATAATCTTTTCACGTTTCGG GACTGTGATAGAGGCTGAAATAATCCGTGACTATAAGACGGGAAACAGCTTGTGCTATGCTTTTATCGAGTTTGAGACAAATGAAGCTTGTGTGCGAGCA TATATGAAGATGAATAACGCTTTGATAGACGACAGAAGGATTAAAGTCGACTTCAGCCAAAGTGTGTCAAAACAGTGGTCACAGTACAGGCAGAAACGAA ATCAGACAGGTGGGAATTGTTTCAAGTGTGGTGCTGCTGATCACAATGCAAAGGATTGCACTGGAAATGGTGCCTCCAAACAGCAGCCTCAGAAATATAC CCTCAAGGATGATAACTCGCAGCGTGGCGGAGAATGTTCCAGGTATGACATGGTGTTCGATGGGGACACTCCTGAAAGCCTGAGACAAGAGAAGAAACTA CCCAATGACCAACTTGGGAGGGAAAGGAGGCATGGAACGACCTCAGATGACCGGTATGAAAGGGCACAACGGGGTGACAAGAGCCGACCTGAAGAAGAAG ACGATGATAAGCACCCCGAGAGGAAAGCTAGTCGATATCCTGACGAGCAATCGGGCGAAAGAGAACATCGCAGGAGCAAGGAGAAAGGCAGTAATAGAAA GAACAATTACCAGAGTCGTGGAGAAAGAAGAGAGAGTGACAGAGACAGAGATTACCGTAAGAGGAATGGAGATGATTACCAGAGTCGCGGAGAAAGAAGA GAGAGTGACAGAGACAGAGATTACCGTAAGAGGAATGGAGATGGCGAACACGATGGTAAACGTCACAGAAGAGACCTGGAGGATGGTAGAGATGATCATA AGAGGCGGCAGGGAGATGGTGAGAAGAGAGGATCGCAAGACAGAAGAGTGAGAATATCAGCATCGAAGGAGTGA
AA sequence Show only first row Show all	>Lus10031194 pacid=23151051 polypeptide=Lus10031194 locus=Lus10031194.g ID=Lus10031194.BGIv1.0 annot-version=v1.0 MSVLIVTSLGDLVVDLFHDQCPMTCKNFLKLCKMKYYNGCLFHTVQKDFTAQTGDPTGVGAGGDSLYKFVYGDQARFFSDEIHHDLKHKNTGTVAMASAG ENLNASQFYITLRDNLDYLDGKHTVFGEVAEGLETLSRINEAYVDEKNRPYKNIRIKHTYILDDNFDDPPQLAELIPDASPEGKPKDEALDDVRLEDDWI PLDEYLRPEELEEVFREKDARASAVVLESIGDIPDADIKPPDNVLFVCKLNPLTEDEDLNIIFSRFGTVIEAEIIRDYKTGNSLCYAFIEFETNEACVRA YMKMNNALIDDRRIKVDFSQSVSKQWSQYRQKRNQTGGNCFKCGAADHNAKDCTGNGASKQQPQKYTLKDDNSQRGGECSRYDMVFDGDTPESLRQEKKL PNDQLGRERRHGTTSDDRYERAQRGDKSRPEEEDDDKHPERKASRYPDEQSGEREHRRSKEKGSNRKNNYQSRGERRESDRDRDYRKRNGDDYQSRGERR ESDRDRDYRKRNGDGEHDGKRHRRDLEDGRDDHKRRQGDGEKRGSQDRRVRISASKE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031194 [exp]	0	1
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	8.5	0.7545
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10030951 [exp]	21.2	0.7236
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	24.2	0.7399
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031772 [exp]	27.6	0.7364
AT5G65540			unknown protein		Lus10035950 [exp]	28.6	0.7033
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	36.3	0.6994
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	39.3	0.7033
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	44.9	0.7144
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	46.3	0.7106
AT3G48120			unknown protein		Lus10004240 [exp]	49.6	0.6959

Compare expression of checked genes

Lus10031194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.