Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80600 581 / 0 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 187 / 5e-54 DELTA-OAT ornithine-delta-aminotransferase (.1) AT4G39660 174 / 3e-49 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT2G38400 167 / 2e-46 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G08860 165 / 1e-45 PYD4 PYRIMIDINE 4 (.1) AT3G22200 145 / 2e-38 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 109 / 7e-26 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 108 / 3e-25 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 48 / 1e-05 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008025 [exp] 777 / 0 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031775 [exp] 227 / 3e-73 AT1G80600 195 / 3e-61 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 196 / 2e-57 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 195 / 8e-57 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10025262 [exp] 183 / 3e-52 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10029922 [exp] 169 / 2e-47 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10004480 [exp] 169 / 4e-47 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 145 / 1e-38 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10010465 [exp] 139 / 5e-36 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095800 [exp] 626 / 0 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.017G053500 [exp] 598 / 0 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 186 / 1e-53 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.016G132200 [exp] 173 / 1e-48 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.006G106800 [exp] 171 / 6e-48 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.007G085600 [exp] 169 / 2e-47 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.016G018500 [exp] 148 / 3e-39 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G020900 [exp] 147 / 4e-39 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.015G101100 [exp] 97 / 2e-21 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.005G082100 [exp] 73 / 1e-14 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10031196 pacid=23150955 polypeptide=Lus10031196 locus=Lus10031196.g ID=Lus10031196.BGIv1.0 annot-version=v1.0 ATGTCGGAACCCTGTCACGACGGTGTCGTGTTGTGCCTCGACGTAGACACCGTCAAATTAGCGGCCAAATCTGAGCCACCGGCAACGGCGAGCAGCAGCA GCAAAGAGATAATGGAGGCGGAGGCGAAAGTTATGGTGGGGACTTACGCTAGAGCTCCCTTGGTTCTGACAAATGGCAAGGGATGTAAGCTTTACGATTT GGAAGGACGCGAGTATTTGGATTTGACCTCTGGGATCGCCGTAAATGCTTTGGGACACTGCGATGCCGACTGGCTTAAGGCCTTGATTGACCAGGCTGGT CGGCTGACTCATGTCAGCAATGTCTATTACTCTGTTCCTCAGGTGGAGCTAGCTAAGAGCTTAGTGGATAGTTCATTTGCGGATAGGGTGTTCTTCTGCA ACTCCGGAACCGAAGCGAACGAAGCTGCGATCAAGTTCGCTAGGAAGTTTCAGAGGCATTCTTCCAACCCAGCAGCAACTGAATTCGTTTCCTTCAGCCA TAGTTTCCATGGAAGGACGATTGGTGCATTGGCTCTCACGAGTAAAGAGCAGTACAGGACTCCTTTCGAACCTGTCATGCCTGGAGTTAACTTTGTAGAG TTTGGAGACATTGAAGCCTCGAGGAAGGCGATTCAGCAGGGGAAGACTGCTGCGGTTTTCGTTGAGCCGGTCCAAGGTGAAGGTGGCATCTATGGTGCTG GAAAGGAGTTCTTGCAGTTCCTCCGTTCTGCTTGCGACGAAGCTGGTGCTCTCCTTGTCTTTGATGAGCACTCTCCCATCCTTTCGCAGGTGCAATGTGG TATAGGGCGAACGGGACATCTCTGGGCGCACGAAGCATACGATGTCTTCCCCGATATAATGACGCTCGCCAAACCACTTGCCGGTGGACTACCCATTGGA GCCGTCCTGGTGACCGAAAGAGTGGCTTCAGCCATAAGCTACGGAGATCACGGGAGCACGTTCGCCGGCGGTCCTCTGATCTGCAGTGCGGCTCTTTCGG TCCTGAAGAAAATCTCCGACCCCACTTTCCTAGCCAGTGTGACCGAAAAAGGACGATTCTTCAAAGGTCTCCTGAAGCAGAAGCTCGGTAAGAACCCGCA CATCAAAGAAATCCGAGGAGAAGGGCTCATTATTGGAGTGGACTTGGACGTTGCAGCTTCACCGTTGGTGGACGCATGTCGAGAAGCCGGCCTTCTGGTA CTGACTGCTGGAAAAGGGAATGTGGTGAGGCTTGTTCCTCCATTGGTGATATCTGAGCAGGAACTCAGCCTTGCTGCTGATATTCTCCACAAGGCTTTGC CAGCACTTGATGCAAGGGATTCCAAGTAG
AA sequence Show only first row Show all	>Lus10031196 pacid=23150955 polypeptide=Lus10031196 locus=Lus10031196.g ID=Lus10031196.BGIv1.0 annot-version=v1.0 MSEPCHDGVVLCLDVDTVKLAAKSEPPATASSSSKEIMEAEAKVMVGTYARAPLVLTNGKGCKLYDLEGREYLDLTSGIAVNALGHCDADWLKALIDQAG RLTHVSNVYYSVPQVELAKSLVDSSFADRVFFCNSGTEANEAAIKFARKFQRHSSNPAATEFVSFSHSFHGRTIGALALTSKEQYRTPFEPVMPGVNFVE FGDIEASRKAIQQGKTAAVFVEPVQGEGGIYGAGKEFLQFLRSACDEAGALLVFDEHSPILSQVQCGIGRTGHLWAHEAYDVFPDIMTLAKPLAGGLPIG AVLVTERVASAISYGDHGSTFAGGPLICSAALSVLKKISDPTFLASVTEKGRFFKGLLKQKLGKNPHIKEIRGEGLIIGVDLDVAASPLVDACREAGLLV LTAGKGNVVRLVPPLVISEQELSLAADILHKALPALDARDSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	0	1
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	1.4	0.9262
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	1.7	0.9152
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	2.2	0.9336
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	4.0	0.9123
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	4.1	0.8852
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	5.0	0.9040
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	5.2	0.8952
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	5.5	0.9039
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	8.8	0.9028
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	11.2	0.8851

Compare expression of checked genes

Lus10031196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.