Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12880 76 / 3e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G56100 67 / 3e-14 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1.2.3) AT4G00872 54 / 2e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G15750 41 / 0.0001 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17220 40 / 0.0003 ATPMEI2 pectin methylesterase inhibitor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068300 [exp] 91 / 2e-23 AT4G00872 113 / 4e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031197 pacid=23151149 polypeptide=Lus10031197 locus=Lus10031197.g ID=Lus10031197.BGIv1.0 annot-version=v1.0 ATGCCTTACTCTTCCTTCACATTTCTCCTCACCTTCATCCTCCTCTCCTCTCAATCTTCCTCCTCATCAAACCCACTCATCCATCAACAATGCCACAACT CCCAGACCCCACTGGTCTGCATCACTTGCCTCCAGTCCCACCCGTCCGAAACCGAACCAACCAACACCACCACCCCGGCCCAACTCGCCGCCGTCCTGCT CAAGTGCATCGGGGCCCACTCCACCTACCTGGCCGCCAACATGACCGACCTCATGCACCTCCCATCAAACGGCACCGCCGTTTCATTAACCCTCAGACCC GTGTTCAAGTCTTGCAGCCGCCAGTTTAAGCTCATGCTCAAGGCGCTCCCCGACGCGGCGGAGTATCTGAAGCGAGGGGACTACGACAACGCTAACGTTA GCATGAAGAAGGCGATGGAGCACCAGCTGACGTGTCAGAAGGCGACACGTGGACTTGAGGTGGAGATTGGGCAGGCGTTTATGTTTTATGATATGCGGGT GAATGATGCGCTGTCCGAGGCTTTCATGCGGATTGTTGACCGGCTCTAG
AA sequence Show only first row Show all	>Lus10031197 pacid=23151149 polypeptide=Lus10031197 locus=Lus10031197.g ID=Lus10031197.BGIv1.0 annot-version=v1.0 MPYSSFTFLLTFILLSSQSSSSSNPLIHQQCHNSQTPLVCITCLQSHPSETEPTNTTTPAQLAAVLLKCIGAHSTYLAANMTDLMHLPSNGTAVSLTLRP VFKSCSRQFKLMLKALPDAAEYLKRGDYDNANVSMKKAMEHQLTCQKATRGLEVEIGQAFMFYDMRVNDALSEAFMRIVDRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	0	1
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	11.3	0.9665
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	12.1	0.9809
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	17.7	0.9776
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	21.7	0.9776
AT2G46640			unknown protein		Lus10030218 [exp]	24.5	0.9199
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	24.7	0.9766
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10012670 [exp]	26.6	0.9363
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10004699 [exp]	27.1	0.9316
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	28.0	0.9757
AT2G10940			Bifunctional inhibitor/lipid-t...		Lus10027704 [exp]	29.0	0.9439

Compare expression of checked genes

Lus10031197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.