Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12870 225 / 4e-75 unknown protein AT5G56120 72 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031776 [exp] 279 / 4e-96 AT3G12870 311 / 3e-109 unknown protein Lus10008355 [exp] 72 / 4e-15 AT5G56120 261 / 2e-88 unknown protein Lus10027112 [exp] 71 / 6e-15 AT5G56120 253 / 2e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G096100 [exp] 247 / 1e-83 AT3G12870 231 / 2e-77 unknown protein Potri.011G167900 [exp] 76 / 9e-17 AT5G56120 276 / 7e-95 unknown protein Potri.001G470800 [exp] 74 / 5e-16 AT5G56120 293 / 2e-101 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031198 pacid=23151038 polypeptide=Lus10031198 locus=Lus10031198.g ID=Lus10031198.BGIv1.0 annot-version=v1.0 ATGGCTGAAACCAGCGAAAACCCATCGTCGTCTTCATCGATCATGGTACCGAAGCAGCCACACCCCCTCCACCAAATCGCCGAAACCCCAACCCACAAGC TCCTCCTCAAGCAATGGCTGAAGGAGGAAGAGCTGATCCTCAACCGAGTCGCATTCAAAGAGTCCCAAGTCGACTCGGTCCGAAAAGAAATTACTCAGCT TTACCTTTCCTTCTTCCTCTTCCACTCAATGTCGCTGCTCCTGCTATTCAACCACGCCAATTCCAGTGCCTCCTATTCTGATTCATCTGCCTGCAAGAGA TCGTGGATTCCGTCGCTGTGTTCGCTCCTCTGCTCGATGGGGATCATATGGTCGGTCCGGTACAAGACCGACGTCGAATCCCACCTGGAGAAGCTGCTGG AGAGGGAGAAGGAGGACGGGAAGCTGCTGGCGAAGTGCGTCGAGGAGCTGAAGAAGAAAGGGAACGAGTTCGATCTGCTCAAGGAAGTCGATGCTTTGAG GAGGGCGAAGAGCTTGAGGGTCGAATCGAGGCAGGTGAAGAAGTGGTCCTCCAGGGATTTCGTCACTCTGTTTTTCTTCTCGGTTTCTTGCCTTGTTCTT GGTTTTACCAGAGTCATCTTATGCAGCTAG
AA sequence Show only first row Show all	>Lus10031198 pacid=23151038 polypeptide=Lus10031198 locus=Lus10031198.g ID=Lus10031198.BGIv1.0 annot-version=v1.0 MAETSENPSSSSSIMVPKQPHPLHQIAETPTHKLLLKQWLKEEELILNRVAFKESQVDSVRKEITQLYLSFFLFHSMSLLLLFNHANSSASYSDSSACKR SWIPSLCSLLCSMGIIWSVRYKTDVESHLEKLLEREKEDGKLLAKCVEELKKKGNEFDLLKEVDALRRAKSLRVESRQVKKWSSRDFVTLFFFSVSCLVL GFTRVILCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12870			unknown protein		Lus10031198 [exp]	0	1
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	3.2	0.9605
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	3.2	0.9604
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	3.5	0.9597
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	5.7	0.9477
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10022772 [exp]	5.7	0.9388
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	6.2	0.9371
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	7.1	0.9383
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	7.1	0.9464
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	8.4	0.9366
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	8.8	0.9451

Compare expression of checked genes

Lus10031198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.