Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56130 1177 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 1160 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 1148 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 1108 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 671 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 662 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 660 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 637 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 632 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 594 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 664 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 632 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10038153 [exp] 621 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 613 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 610 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 560 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 508 / 4e-166 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 492 / 1e-158 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10026207 [exp] 381 / 6e-123 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067900 [exp] 1321 / 0 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G082900 [exp] 1058 / 0 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G148000 [exp] 1030 / 0 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 689 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385400 [exp] 676 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 671 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G063200 [exp] 668 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G106400 [exp] 664 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 661 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 660 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10031199 pacid=23151064 polypeptide=Lus10031199 locus=Lus10031199.g ID=Lus10031199.BGIv1.0 annot-version=v1.0 ATGGTGAATTCGTTACCTGCGATTGCTTTGATTCTCGTTCTTGCTTCTTCTTATTCTTCAATCGGTGGTGTTTTCCGAGTTGCTCGAGCTCAGAATCAAA CTCGTCGAGCTACCACTGATCCTGATGAAGCGAGAGCAGTGAACGCTGTGTTCGCAAGATGGGACATCGGAGCTGCGACCGCCGGCGACATGAGGTGGAA CATAAGCGGCGAAGTATGCAGCGGAGCAGCGTTGGGTTCAAACCCTACAATCGACGATCCGGCTTTCAATCCTGGCATCAAATGCGACTGTTCTTACAAC AACAACACCCTCTGCCGCGTCATCGCCTTGAAAGTTTCAGCACTGGACATTGCAGGTCCAATCCCGGATGAGCTCTGGACTCTCACCTTCCTCACCAATC TGAATTTGGGTCTGAATTTCCTGTCTGGAACACTATCTTCATCCATTGGCAATTTGACTCGGATGCAGTACTTGAATCTGGGCACCAACCAATTCACTGG TCCACTCCCTAGAGAGATTGGCTTGCTTACTGGTTTAATATCATTTGGCTTTGGATCAAACAACTTCAGCGGCTCTCTGCCATCTCAGCTGGGAACTTTA TCAAGGCTGGAGCAAATGTATTTCGACAGTTCTGGTCTTAGTGGCCCGATTCCTCCAACATTTGCTGATTTAACCAGATTGTTAACAGTATGGGGATCGG ATAATGCATTTACAGGCAGGATTCCGGATTTCATTGGGAACTGGAGAAATCTTACCACTTTACGGCTTGAAGGAAACGCTTTTGATGGTCCGATACCGTC ATCCTTCTCCAACTTAACTGCTTTGACAGAACTGAGGATAGGTGGTATCACTAATGGAACCACTTCTCTGGAAGTCATTAGAGGCCTGACCTCTCTATCC ACTTTAGTCCTCAGGGATAGCAGTATATCCGGTACGCTTCCATCCGACATCTGGAACTTCCCGAGCTTGAATTTCTTAGACTTGAGCTTCAACAGAATCA GAGGAACAATTCCAGCTTCACTTTTCAACATGAGCTCCCTCACGTTCCTGTTTCTTGGCAATAACAGACTGAATGGTACACTTCCCGCCACGAAAATTCA ATCTCTTATCAACATAGATGTTTCATACAATAACTTAGGAGGGGCATTGCCTTCTTGGATCAATGCAACAAACCTTCAGCTGAATATAGTATTCAATAAC TTCACAATAGACCCTTCAAACACCAATGGTTTACCGTCAGGGATTAACTGTCTTCAACAGAACTTCCCCTGCAACAGAAATCCTCCAATCTACAACGAAA CGCTCGGCCCGGCAACTTACTACGTACCACGAGAAACAGACAGATGGGGAGTAAGCAATGTGGGATTGTTCGCCGGAAGCAACAACGTTTCCTACACAAT ATTCTCGTCGTCGCAGTTCACCAACACGCTAGACTCGGAGCTGTTCCAGACAGCGCGCCTGTCCGCTTCGTCTCTGAGGTACTACGGCTTGGGGCTCGAG AACGGGAACTACACCGTCACGCTCCAGTTTTCCGAGACCGCCATTGTCAATGGTAACACCTGGAGGAGCCTCGGAAGGAGGCTCTTTGACGTTTATATCC AGGGGAATCGTGTCCTGACGGATTTCAATATAAAAGAAGAAGCGGGAGGAGTGTCGACCCGTGCTGTTCAGAGGCGGTTTACGGTAAACGTATCGGAGAA CTACATGGAGATACATTTGTACTGGGCTGGGAAGGGTACCTGCTGCATCCCTGCGCAGGGTGTGTACGGCCCTTCCATTTCGGCAATTAGTGCTCAACCA GATTTCGAACCTACTGTTAGCAACAATCCTCCGAGCACAGGAGGAGGTAGTGATAACAAGACAGGGGTGATCGTTGGGATTGTCATTGGCATTCTGGTGC CGTGCTCTCTGCTCGCTTTCGCGATCTTCGTTGTAATCCGTAGGAAGAGAAGACAAAGAGCCTTTGAAGACCATGAGCTCGAAGGTATCGATACCAGACC CTACACTTTCAGTTATGCTGAGCTAAGGGGAGCCACTCAGGACTTCAGCGCGTCTAACAAGCTTGGAGAAGGAGGATTCGGACCGGTCTACTTGGGAAAG CTTGACGATGGTAGGGTGATCGCGGTGAAGCAGTTGTCAGTTCAATCACACCAAGGGAAGAGCCAATTCATCGCGGAGATCGCAACTATATCCGCTGTGC AACACCGTAACTTGGTGAAACTGTACGGATGCTGCATCGAGGGGGAGAACAGACTTCTCGTCTACGAGTATCTCGAGAACAAAAGTCTTGACAAAGCGCT CTTCGAAGAAACTACCTTGAACCTTGATTGGCCAACGCGGTATGATATCTGCTTGGGGATAGCAAGAGGGCTAGCTTATCTTCACGAAGAATCGAGGCTG AGAATCGTGCACCGTGATGTGAAAGCTAGTAACATCCTTCTGGATTCCGAACTTGTTCCGAAAATTTCAGATTTCGGGCTGGCGAAACTCTACGATGATA AGAAGACTCACATCAGCACCCGTGTTGCAGGAACAATAGGATACCTAGCTCCAGAGTACGCGATGCGCGGCCACCTCACGGAGAAAGCCGACGTCTTCGC CTTCGGAGTCGTAGCTCTAGAAATCGTGAGCGGGAGACCAAATTCAGACACGACGCTGGACGAGGAAAGAATGTACCTTCTTGAATGGGCGTGGTTCCTA CACGAGAACAACCGGGAAGTGGAGCTCGCGGACTCGAGATTGTCGTCGGAATTCGACGAAGAAGAGCTCAAACGATTCGTGGGGATCGCCCTCCTCTGCA CCCAGGCTTCCCCTAGTTTGCGGCCCTCGATGTCCCGAGTCGTGGCGATGCTGTCCGGAGACGTTGAAGTGGGAGCTGTATCGTCGAGGCCTGGCTACTT AACTGACTGGAAGTATGATGATGTAACGAGAAGTAGCTTCATGAGTGACACTACTGGTACCAGTACAAAAGGTACTGCAACTGGTACAACTTCATCAAGT ACAACCATGGTGACTGATCATGAAAGTTCCCCTCTCAGCAGTAATACGAAGCCGATGCTTCATGGGATTATTGGAGAGGGTAGATAG
AA sequence Show only first row Show all	>Lus10031199 pacid=23151064 polypeptide=Lus10031199 locus=Lus10031199.g ID=Lus10031199.BGIv1.0 annot-version=v1.0 MVNSLPAIALILVLASSYSSIGGVFRVARAQNQTRRATTDPDEARAVNAVFARWDIGAATAGDMRWNISGEVCSGAALGSNPTIDDPAFNPGIKCDCSYN NNTLCRVIALKVSALDIAGPIPDELWTLTFLTNLNLGLNFLSGTLSSSIGNLTRMQYLNLGTNQFTGPLPREIGLLTGLISFGFGSNNFSGSLPSQLGTL SRLEQMYFDSSGLSGPIPPTFADLTRLLTVWGSDNAFTGRIPDFIGNWRNLTTLRLEGNAFDGPIPSSFSNLTALTELRIGGITNGTTSLEVIRGLTSLS TLVLRDSSISGTLPSDIWNFPSLNFLDLSFNRIRGTIPASLFNMSSLTFLFLGNNRLNGTLPATKIQSLINIDVSYNNLGGALPSWINATNLQLNIVFNN FTIDPSNTNGLPSGINCLQQNFPCNRNPPIYNETLGPATYYVPRETDRWGVSNVGLFAGSNNVSYTIFSSSQFTNTLDSELFQTARLSASSLRYYGLGLE NGNYTVTLQFSETAIVNGNTWRSLGRRLFDVYIQGNRVLTDFNIKEEAGGVSTRAVQRRFTVNVSENYMEIHLYWAGKGTCCIPAQGVYGPSISAISAQP DFEPTVSNNPPSTGGGSDNKTGVIVGIVIGILVPCSLLAFAIFVVIRRKRRQRAFEDHELEGIDTRPYTFSYAELRGATQDFSASNKLGEGGFGPVYLGK LDDGRVIAVKQLSVQSHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGENRLLVYEYLENKSLDKALFEETTLNLDWPTRYDICLGIARGLAYLHEESRL RIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFAFGVVALEIVSGRPNSDTTLDEERMYLLEWAWFL HENNREVELADSRLSSEFDEEELKRFVGIALLCTQASPSLRPSMSRVVAMLSGDVEVGAVSSRPGYLTDWKYDDVTRSSFMSDTTGTSTKGTATGTTSSS TTMVTDHESSPLSSNTKPMLHGIIGEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	3.7	0.8641
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	4.9	0.8231
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	5.5	0.8333
AT5G36930			Disease resistance protein (TI...		Lus10001366 [exp]	6.5	0.7842
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	16.7	0.7553
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	18.6	0.7700
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	21.4	0.7517
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	22.0	0.7710
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	24.5	0.7816
					Lus10023285 [exp]	24.7	0.7579

Compare expression of checked genes

Lus10031199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.