Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19500 447 / 5e-153 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G56970 443 / 2e-151 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 429 / 8e-146 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT1G75450 378 / 2e-125 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT3G63440 347 / 8e-114 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 343 / 1e-111 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT5G21482 328 / 1e-106 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031188 [exp] 671 / 0 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031765 [exp] 528 / 0 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10024289 [exp] 377 / 2e-125 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031778 [exp] 365 / 2e-123 AT5G56970 190 / 2e-56 cytokinin oxidase 3 (.1) Lus10027611 [exp] 330 / 2e-108 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10026471 [exp] 331 / 2e-107 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10003845 [exp] 284 / 1e-90 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10039574 [exp] 216 / 8e-64 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 212 / 2e-63 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152500 [exp] 509 / 4e-177 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.007G066100 [exp] 492 / 3e-170 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.005G232300 [exp] 397 / 5e-133 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.002G030500 [exp] 392 / 4e-131 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G047900 [exp] 351 / 4e-115 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.016G044100 [exp] 345 / 8e-113 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.001G020900 [exp] 342 / 9e-112 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.003G203600 [exp] 340 / 3e-111 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G221000 [exp] 318 / 2e-102 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10031200 pacid=23151171 polypeptide=Lus10031200 locus=Lus10031200.g ID=Lus10031200.BGIv1.0 annot-version=v1.0 ATGATACCATTAATCTACACCAAGTTCTTAACCATCATAACATTAATCCTCCTACCATCCACCGTCGCCGTCGCCGCATTCCAACCCCTCCTCCCCTGCC CGCTCCCGACCCGACTCGAGTCGAAGCTACGAACCGACCCGAGTTCGCTATCCTCTGCTTCAGTCGACTACGGCAACATCCTCCACGTCAAACCATCGGC GGTCATGTCTCCGATATCAGCCGCCGAAGACATCTCGCTGCTGATAACGGCGTCGTACAATTGTCATCTCCGGCCGTACGGTGTTGCCGCCAGAGGGAAT GGACATAGTACACGTGGCCAGAGCATGGTCAGCAACGGCGTCGTTTTGGACATGAGGAGTTTGAATCATGCGGTTAGGGTCTCCAAGGAGAAGGATCAAG TTTGGTTTGCTGACGTGGCGGGCGGGTCGCTTTGGAGTGAGGTGCTGAATGCCACGCTGAAAGAAGGGGTTGTGCCTGTAATTACGTGGACGGATGTCTT GACATTGACGGTCGGAGGGACGCTTTCGAATGCCGGGATTGGGGGCCAAGCGTTCCAACTTGGCCCTCAGATCGTTAACATTCTTGAGTTGGACGTTGTC ACGGGGAAAGGAGAGATGGTGACTTGCTCAGCAAGCAACCACCCTGAGCTTTTCAATGGTGTTTTGGGTGGCCTTGGCCAATTTGGAGTGATTACCAGAG CAAGACTTGCAGTGGCTCCCGCTCCACAAAGGGTAAAATGGGGACGATTTCTGTACACCAATTTCACCGATTTTACCAATGACCAAGAGAGCATCATCGC CGGCAACAATGGAAGAGGTCAACCAAATGGAGTTGACTATTTAGAAGGTGAACTTCTGCTTGACAACGGCAACCCAAAGACAGAGTTCCCAACTGAAGCT CAACCCAAAATAGAATCTCTCGTTAAGCAAAACGGCATCGTTTACGTCCTTGAGTTGGCCTTGTTCTATGACCACAACAACCAACAATCCAAGGAAAAGC AACTGAAGCAACTGGTCAGAGGGCTAAAGTACGACTGTGGATTCAAGTTCATCAATGATGTCAGCTACCAGAAGTTCCTAGGCAGAGCTCACATTAAGTA CCCTAATGTACAAGCACATCCGTGGCTGAATCTATTCGTGCCGAAATCTGGAATCTTGGAGTTCGGCTCCGGTGTAGTTACCGGCATCATCCTGCAGCGG AACATCAGCACCGGACCTGTCCTTTTCTACCCGATGAACAGAAATAAGTGGGATGACAGGATGTCAGCGGTTTGCCCCGACGAAGATGTATTCTACTCAT TTGGGTTACTAAGCAAGAGCGAAGTGGACGATTGGCAGAAGTACTTGGAGCAAAACGCCGACGTTCTGGAATACTGTGAGAAGGCTGGCATCAAGGTGAA GCAGTATCTTCCCAACATTTCAAACCAGAAAGATTGGATTCGACATTTCGGATCCAAGTGGGACACTTTTCGATGTAGGAAAGAGCAGTTCGATCCAAAG TTCATTCTGTCTCCAGGCCAGAAAATCTTCAGAAAGGAATGTCAATCTCCTCGCTCAAAACACTTGCAGGATGTCTAG
AA sequence Show only first row Show all	>Lus10031200 pacid=23151171 polypeptide=Lus10031200 locus=Lus10031200.g ID=Lus10031200.BGIv1.0 annot-version=v1.0 MIPLIYTKFLTIITLILLPSTVAVAAFQPLLPCPLPTRLESKLRTDPSSLSSASVDYGNILHVKPSAVMSPISAAEDISLLITASYNCHLRPYGVAARGN GHSTRGQSMVSNGVVLDMRSLNHAVRVSKEKDQVWFADVAGGSLWSEVLNATLKEGVVPVITWTDVLTLTVGGTLSNAGIGGQAFQLGPQIVNILELDVV TGKGEMVTCSASNHPELFNGVLGGLGQFGVITRARLAVAPAPQRVKWGRFLYTNFTDFTNDQESIIAGNNGRGQPNGVDYLEGELLLDNGNPKTEFPTEA QPKIESLVKQNGIVYVLELALFYDHNNQQSKEKQLKQLVRGLKYDCGFKFINDVSYQKFLGRAHIKYPNVQAHPWLNLFVPKSGILEFGSGVVTGIILQR NISTGPVLFYPMNRNKWDDRMSAVCPDEDVFYSFGLLSKSEVDDWQKYLEQNADVLEYCEKAGIKVKQYLPNISNQKDWIRHFGSKWDTFRCRKEQFDPK FILSPGQKIFRKECQSPRSKHLQDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	0	1
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10041546 [exp]	1.4	0.9069
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	6.7	0.8754
					Lus10038520 [exp]	7.5	0.9254
AT5G24090		ATCHIA	chitinase A (.1)		Lus10039317 [exp]	9.9	0.8739
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	12.6	0.8776
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	14.0	0.8706
AT2G18420			Gibberellin-regulated family p...		Lus10021098 [exp]	16.9	0.8839
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	21.9	0.9017
AT3G09010			Protein kinase superfamily pro...		Lus10040392 [exp]	22.6	0.8761
AT5G24090		ATCHIA	chitinase A (.1)		Lus10027560 [exp]	31.2	0.8612

Compare expression of checked genes

Lus10031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.