Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56070 1377 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 1277 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 477 / 1e-154 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 471 / 3e-152 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G22980 345 / 2e-104 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G13650 110 / 1e-24 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G39900 110 / 1e-24 Small GTP-binding protein (.1) AT5G08650 99 / 4e-21 Small GTP-binding protein (.1) AT2G31060 99 / 4e-21 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G45332 84 / 2e-16 Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031763 [exp] 1433 / 0 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 743 / 0 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031186 [exp] 667 / 0 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031185 [exp] 514 / 2e-178 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031129 [exp] 477 / 3e-154 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 471 / 5e-152 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10004749 [exp] 355 / 2e-108 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10043477 [exp] 228 / 9e-66 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 203 / 3e-58 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065600 [exp] 1392 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 1390 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 1386 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 486 / 6e-158 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 482 / 2e-156 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.009G152500 [exp] 355 / 6e-108 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G109900 [exp] 107 / 1e-23 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.017G079800 [exp] 105 / 3e-23 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 102 / 4e-22 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 100 / 3e-21 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10031201 pacid=23151178 polypeptide=Lus10031201 locus=Lus10031201.g ID=Lus10031201.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTCACAGCTGAAGAGCTTCGTCGTATTATGGACTACAAGCACAACATCCGTAATATGTCCGTCATTGCCCATGTTGATCACGGGAAATCTA CACTTACTGATTCTCTAGTGGCTGCTGCGGGTATCATTGCCCAAGAGGTTGCTGGGGATGTGCGGATGACTGATACCCGTGCTGATGAAGCAGAGCGTGG TATTACAATCAAGTCTACTGGAATCTCTCTTTTCTATCAGATGACTGATGAGAGCATCAAGAGTTACACGGGAAAGAGGGACGGGAGTGAGTACCTTATC AATCTCATCGACTCCCCTGGGCACGTTGACTTCTCATCTGAAGTCACTGCTGCTCTCCGTATCACTGATGGTGCTCTTGTGGTCGTGGATTGTGTTGAGG GGGTCTGGGTGCAGACTGAGACTGTTCTTCGTCAAGCTTTGGGTGAAAGGATCAGGCCTGTGCTCACTGTGAACAAGATGGACAGGTGTTTCCTTGAGCT CCAAGTGGATGGAGAGGAAGCCTATCAGACGTTCCAGAGGGTTATTGAGAATGCTAATGTCATCATGGCAACCTATGAAGATCCTCTTCTCGGTGATGTC CAGGTGTACCCGGAGAAAGGAACTGTTGCCTTTTCCGCTGGTCTGCATGGATGGGCTTTTACGTTGACCAACTTTGCCAAGATGTATGCTTCTAAGTTTG GAGTGGACGAGGCCAAGATGATGGAAAGACTGTGGGGTGAGAATTTCTTTGACCCTGCCACTAAGAAATGGACCACCAAGAACACTGGCTCTGCTACTTG CAAGCGTGGGTTTGTGCAGTTCTGTTACGAGCCGATCAAGCAGATCATCAACACCTGTATGACCGACCAGAAGGACAAACTGTGGCCCATGTTGAAAAAA CTCAATGTTACAATGAAGGGTGAAGAGAAGGACTTAATGGGCAAGGCTTTGATGAAGCGTGTCATGCAAACCTGGCTTCCAGCTGCAGATGCTCTCCTGG AAATGATGATCTTTCACCTTCCGTCTCCTGCTACTGCCCAGAAGTACCGTGTGGAGAACTTGTATGAGGGCCCACTTGATGATCAGTATGCTAACGCCAT CAGGAACTGTGACCCTGATGGCCCGCTCATGCTTTATGTATCCAAAATGATTCCCGCTTCTGACAAGGGTAGGTTCTTTGCCTTTGGTCGTGTCTTTGCT GGTAAGGTATCTACTGGTGTGAAGGTGAGGATTATGGGTCCCAACTACGTCCCTGGTCAGAAGAAGGATCTGTATGTGAAGAATGTCCAGAGAACTGTTA TCTGGATGGGTAAGAGGCAGGAGACTGTGGAGGATGTTCCTTGTGGTAACACCGTTGCTTTGGTTGGTTTGGATCAATTCATCACAAAGAATGCCACTTT GACCAACGAGAAGGAAGTTGATGCTCACCCAATCCGTGCAATGAAGTTCTCAGTATCCCCTGTTGTTCGTGTTGCTGTTCAGTGCAAGGTTGCTTCTGAT CTGCCGAAGTTGGTGGAAGGTTTGAAACGTCTGGCCAAGTCTGACCCCATGGTTGTGTGTAGTATTGAAGAGTCTGGTGAGCACATCATTGCTGGTGCTG GAGAGCTTCACCTTGAAATCTGTTTGAAGGATCTTGTGGATGACTTCATGGGTGGTGCTGAGATCACGAAATCCGACCCAGTTGTGTCCTTCCGTGAAAC CGTCCTTGAGAAATCAAGCAGAGTCGTCATGAGCAAGTCCCCCAACAAGCATAACCGTCTCTACATGGAGGCCAGACCATTGGAGGAAGGATTAGCTGAG GCAATCGATGATGGCCGCATTGGCCCAAGGGATGACCCCAAGGTCCGTTCCAAGATCCTCTCTGAGGAGTTCGGCTGGGACAAGGATCTCGCCAAGAAGA TCTGGTGCTTCGGTCCCGAGACCACCGGCCCTAACATGGTAGTGGACATGTGTAAGGGAGTTCAGTACCTGAATGAAATCAAGGATTCAGTCGTGGCTGG GTTCCAGTGGGCATCAAAGGAAGGTGCGCTTGCAGAAGAAAACATGAGAGGAATCTGCTTCGAAGTCTGTGATGTGGTTCTCCACGCCGATGCTATCCAC AGAGGTGGTGGTCAAGTCATCCCAACAGCCAGGAGGGTCATCTACGCTTCCCCACTGTCTGCCCAGCCAAGGCTGGTCGAGCCTTGCTACCCTCGCGGGN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNAAGAGGAAGGGTTTGAAGGAGCAGATGACCCCCCTCTCCGATTTCGAGGACAAGCTGTAAGAGCATCTTTTGGTCTTTGC TGCAGGAGATGGATGATCCTAGTTATGGTTTTTTTTATACTGATGTTGTGTCGTTGTGGTTTGAGTCCTATTATGTGA
AA sequence Show only first row Show all	>Lus10031201 pacid=23151178 polypeptide=Lus10031201 locus=Lus10031201.g ID=Lus10031201.BGIv1.0 annot-version=v1.0 MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLFYQMTDESIKSYTGKRDGSEYLI NLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVWVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDV QVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMTDQKDKLWPMLKK LNVTMKGEEKDLMGKALMKRVMQTWLPAADALLEMMIFHLPSPATAQKYRVENLYEGPLDDQYANAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFA GKVSTGVKVRIMGPNYVPGQKKDLYVKNVQRTVIWMGKRQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASD LPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLVDDFMGGAEITKSDPVVSFRETVLEKSSRVVMSKSPNKHNRLYMEARPLEEGLAE AIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIH RGGGQVIPTARRVIYASPLSAQPRLVEPCYPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGFEGADDPPLRFRGQAVRASFGLC CRRWMILVMVFFILMLCRCGLSPIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	0	1
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	1.0	0.9294
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	2.4	0.9294
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021964 [exp]	3.0	0.9179
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	3.2	0.9020
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	4.6	0.8958
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	5.7	0.8778
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	6.0	0.9044
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10035813 [exp]	10.4	0.8755
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10025331 [exp]	11.8	0.8605
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	13.7	0.8848

Compare expression of checked genes

Lus10031201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.